Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00169 ATGGCGGAATTCCCTGCAGATTTCCACAGCTTGATGGACGGAACAACTATGGAGTTAGCTGCTCAATTCCCTGCTCTTAACCCAAGATTATTCGACTATTCCCTGAGTTTCCAGAGCTACTTCTCTCTCTCAAATGACATGTTTTGTGCTCATCAAACACCCGAAAATCCTGGAATCTCCGGGGAAATTTTCCCAGAAAGCAATCAGATTTCACAGCCAATCCTTTCAACAGAAAATGAATCCCACGAATCAAGAAAGAGGAGAGCCATTGATCAACTACAAACAAGCTCTGCAATCTCAACTCCTCCAGCTTCTGAAAACGGGATCAAAAGGAAGAAGAGCTCAGGAGGGCGAAAGAGAGTAAAAAGTAAGGAGAGAGAAGAAGAGAAATCAGGTGAAATTGTTCTTGTCAGAGCAAGACGAGGCCAAGCTACTGACAGTCACAGTTTAGCAGAAAGGGTTAGGAGAGGAAAAATCAACGAAAGACTAAGATGCCTCCAAGATATTGTTCCAGGATGCGACAAGTCCATGGGGATGGCAGTGATGCTGGATGAGATTATCAATTATGTTCAGTCGTTGCAGAGTCAGGTTGAGTTTCTTTCAATGAAACTCGCTGCAGCCAGCAGTTTTAATGATTTCAATTCACAAACATTTGCCCCAGAAAATTTTCCGGTGCGTTGA 681 43.47 MAEFPADFHSLMDGTTMELAAQFPALNPRLFDYSLSFQSYFSLSNDMFCAHQTPENPGISGEIFPESNQISQPILSTENESHESRKRRAIDQLQTSSAISTPPASENGIKRKKSSGGRKRVKSKEREEEKSGEIVLVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCDKSMGMAVMLDEIINYVQSLQSQVEFLSMKLAAASSFNDFNSQTFAPENFPVR 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5996705 5997709 - BLOR05450 Blo13g00169 68564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00169 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 209 IPR036638 GO:0046983
Blo13g00169 226 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Blo13g00169 226 SMART finulus 149 199 IPR011598 GO:0046983
Blo13g00169 226 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 9 219 IPR024097 GO:0006355
Blo13g00169 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
Blo13g00169 226 PANTHER TRANSCRIPTION FACTOR BEE 1 9 219 - -
Blo13g00169 226 Gene3D - 140 212 IPR036638 GO:0046983
Blo13g00169 226 CDD bHLH_AtBPE_like 137 218 - -
Blo13g00169 226 MobiDBLite consensus disorder prediction 91 108 - -
Blo13g00169 226 MobiDBLite consensus disorder prediction 77 131 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00825 Blo13g00169 CCT
Blo04g00825 Blo13g00169 ECH
Blo13g00169 Blo15g00068 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00825 Blo-Chr4:8695695 Blo13g00169 Blo-Chr13:5996705 3.02E-68 dispersed
Blo13g00169 Blo-Chr13:5996705 Blo16g01026 Blo-Chr16:38619352 1.42E-40 dispersed
Blo13g00169 Blo-Chr13:5996705 Blo15g00068 Blo-Chr15:571507 1.59E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13119 PF00010 HLH 7.00E-06 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00169 - - tcc:18604139 207.608