Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00177 ATGGTTGAGTCAGTACCCACTCTTGTCTGGCTGTCATTGATGGTGGGTGAAGAAGAATTGCAGGAGAAGGATGGTGAAGAGCTGAGCCTATGGAAGATCAACGGTTCGAGGTTCGCAGCAATAAGCCTTGATGATTGGACGGTGAACAGTTCAGTGGGGGGAGTTTTGGCCTTAGCTGCTTTACGCGGTGAGCTCGGAACCCATTTTTTTGACAATCTTAAAATTCCTTCCAGCTGGGATTTGAAAGATCGATATCAACCTAAGCAGGGGAGGGAGGGAGGGAGATGGCACAATTGTTTAGATCCTTCTTTAAAAAGAGGCAACTGGACTGAAGAAGAGGATCAGATGCTTTCAACAGCAATTAGCGAACACGGCTATAGTTGGGCCAAGGTGGCGACATGTGTGCCTTCACGTACTGATAGTGAGTGTCGGAGGAGGTGGACAAAATTATTTCCAAATGAAGTTCCATTGCTCCAAGAAGCAAGAAGAATTCAAAAGGCCGCTTTTATTGGCAACTTTGTTGATCGAGAGTCAGAAAGATCTACCCTTCTTCCTATTGACTTTCAACCAACACCCATTTCAAATCCAATCAGTGCACCAGAGAATGTAAATCCTTCTCAAAAAAGGAAGAGGAAGCTGAGCCAAAGGCCCAAGAAAGTCAAATCCAAGAAGGCCAAGACACAAACTGATGAAGTTATGGACCCAGTCATTGCTGCCTTTCCAAAGAAAATTAGGACCAAGAGAACTAGGAGAAAAACAGCAAGGACGTCAGACAAGGTTGATGTTTCAAAGAATGGTAGCCAATCAGTTGAGAACAACGAGAATCACAAGTTGCAGCCAGAGATCAGGGAATCGAAGTTAACTTCTGGCGCTTGTGTTAAAGCTGCTGATTATAATGCAACAGTCAACAATAAGAAAAGGGATCTTAATGAGCTTTCTAGGGGCAATGACTGCCTCTCTGAACTTATGGAAGACCAGAATTTTATGGATTCTTCAGCAATGTCATCGTTGTCAGAGAGTATACGCAACAATGAACTTCTTGATGATCGTTTGTTCTATTTGGAATTGGCACAATTAACAACGACGAATGGGGCCGATAATTCTGGAACCTCTTTCTGA 1119 43.61 MVESVPTLVWLSLMVGEEELQEKDGEELSLWKINGSRFAAISLDDWTVNSSVGGVLALAALRGELGTHFFDNLKIPSSWDLKDRYQPKQGREGGRWHNCLDPSLKRGNWTEEEDQMLSTAISEHGYSWAKVATCVPSRTDSECRRRWTKLFPNEVPLLQEARRIQKAAFIGNFVDRESERSTLLPIDFQPTPISNPISAPENVNPSQKRKRKLSQRPKKVKSKKAKTQTDEVMDPVIAAFPKKIRTKRTRRKTARTSDKVDVSKNGSQSVENNENHKLQPEIRESKLTSGACVKAADYNATVNNKKRDLNELSRGNDCLSELMEDQNFMDSSAMSSLSESIRNNELLDDRLFYLELAQLTTTNGADNSGTSF 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6711550 6720296 - BLOR05458 Blo13g00177 68572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00177 372 SMART sant 105 153 IPR001005 -
Blo13g00177 372 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 95 306 - -
Blo13g00177 372 CDD SANT 108 151 IPR001005 -
Blo13g00177 372 MobiDBLite consensus disorder prediction 260 275 - -
Blo13g00177 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Blo13g00177 372 SUPERFAMILY Homeodomain-like 94 151 IPR009057 -
Blo13g00177 372 MobiDBLite consensus disorder prediction 188 229 - -
Blo13g00177 372 Pfam Myb-like DNA-binding domain 106 150 IPR001005 -
Blo13g00177 372 Gene3D - 103 154 - -
Blo13g00177 372 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
Blo13g00177 372 MobiDBLite consensus disorder prediction 246 278 - -
Blo13g00177 372 MobiDBLite consensus disorder prediction 188 204 - -
Blo13g00177 372 MobiDBLite consensus disorder prediction 209 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00177 K09422 MYBP; transcription factor MYB, plant - csv:101216287 192.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00842 Blo13g00177 CCT
Blo13g00177 Blo16g00123 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00177 Blo-Chr13:6711550 Blo15g00266 Blo-Chr15:2853866 4.08E-09 dispersed
Blo13g00177 Blo-Chr13:6711550 Blo09g00321 Blo-Chr9:13429239 2.24E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13121 PF00249 Myb_DNA-binding 2.20E-15 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00177 Blo_Chr13 FPKM 8.434757 11.000229 5.355784 5.810947 15.327942 24.178833 19.074047 4.87952 5.052219 3.319876