Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00181 ATGTTGGGAACTGTCAAAGCGACTCTTTCGGGGACTGTATCGGGGACTATATCAAGAATTGTCTCGGGGGTTGTCTTGGGGACTCTAAAACCCATAAATGTGATCTCCGACCTTCCTCTGCCGCCTCTGCCTCTACCTCTACTTTTGTCTCTATCGCCTCTGCTGCCATGTGCACTGGACTCTGGGCCTCCACCTTCGCATACATCCCTCAACCGATGCTTCGGCGAGCTGATCGCAAACCACGAAGTTCTCGGCGACGCTGGAAGTAGTGTTGGAGGAGAGCTGAATGGCGATATTTTGAGGGTTAAGTACTACGATTTTCTTGTCGAGCAAGACGAAGTTGTCGATGTTCGTAAAATTTGGAGTTGTAAAGAGGGCTGTTTCAGTTCCACCATGTCCATGTCTCTTAGACCCACTTCGCCCTTTCCATTCCGCAGACCACCTAAAGGTTTAGAACCTTTATTTCGCTACCTTACCCTGAAAAACAGCCAACCACTAGGGTTAAGGAACTTGCAAGCTCGCTCGCGTTTGACGCCGGGGGTATGGTGTTTGAGTTCCTCTAGAGAAATGGTGGAGTGGAAGGAAAAAAAGCTGAATTTGGTTCGTTTGAGGCATAGAAGTGTTGTGTTTCCATTTTCGCAGTACCTGCAAAACTCTAATTATGGACGGTTTGCTTATGAAGATGTGTCCAGTGATGAATCGGATTACGAAATGGGGTCTCCTCAGCAACAAATGGGTGCATCAACCCTTGATAATATTGATGAATGGAGGTGGAAGTTAACTATGCTTCTTCGCAACAATGAGGAAAAAGAGATTGTTTCAAGGGAGAAGAAAGATAGACGCGATTTTGAGCATCTTTCAGCAATAGCAACAAGAATGGGTTTGTTTAGTCGACAATATTCTAAAGTAGTAGCCTTTAGTAAAGATCCTCTTCCAAATTACCGACCAGATTTGGATGATAAGCGGCCACAAAGAGAGGTGGTATTACCTTTTGGGCTTCAAAAAGATGTCGATGCTCATCTCAAATTATACCTTTCTAAAAAATCTATGTCTAAGGGTAGAGGAAGCTTTTCGGACGATCCTTGCTCTATATATGGCATTGGTGGAAATACTGCTTCTAATAATGTGCAGCAGGAGCCATTGACAACAAATAATATATTCAGGGAGAAGTTTCTTCGCCGCATAAGTTTGCAAATGCGAAATCAGCAACAGAACTGGCAGGATTCTCCCGAAGGCCAAAAGATGGATGAATTTCGTACAAGCCTCCCTGCATTCAAGGAGAAGGATACGTTATTGAAAGCCATTTCAGAAAACCAGGTTGTTGTTGTCTCTGGTGAAACTGGCTGTGGCAAAACGACTCAACTTCCCCAATATATTCTAGAATCAGAAATTTATGCTGCCCATGGAGCTTTGTGTAGCATAATTTGTACCCAGCCAAGGCGAATATCTGCGATGGCTGTATCTGAAAGAGTTGCTGCAGAGCGTGGAGAGAAACTTGGGGAATCTGTTGGTTACAAAGTTCGATTGGAAGGAATTAAAGGGAAGGACACGCGTCTTCTGTTTTGCACCACCGGTGTATTATTGAGGAGATTGCTCGTTGACAGAAATTTAAAAGGTGTTACTCATGTTATTGTCGATGAGATTCATGAGCGTGGAATGAATGAAGATTTTCTTCTGATTGTACTGAAGGATCTTCTACCTCGTCGACCAGAGTTGAGGTTGATTTTGATGAGTGCTACCTTAAATGCAGAGCTTTTCTCTTCTTATTTTGGTGGTGCTCCTAAAATCCATATTCCTGGTTTTACACATCCTGTGCGAGCCCACTTTTTGGAGAATATCCTGGAAATGACGGGCTATCGGTTAACACCTTATAATCAAATTGACGACTATGGCCAAGAAAAGGTTTGGAAAATGCAGAAACAAACTCAATCCGTTAAAAGAAGGAAGAGCATGATAGCTTCTTCCATTGAGGATGCGCTAGAGGCTGCTGATTTTAATGGATATAGCCCTCAAACTCGCGAGTCTCTATCCTGCTGGAATCCTGACTCCATTGGTTTTAACTTGATCGAGCACATTCTTTGTTACATAGTCAAGAAAGAAAGGCCTGGCGCAATTTTGGTATTTATGACTGGTTGGGACGACATAAACTGTTTAAAGGATCAGCTCCAATCTCATCCCTTGTTGGGAGATCCTAGCAGAGTTTTGCTGCTTGCATGCCATGGTTCTATGGCCAGCTCTGAGCAGAGGTTAATATTTGATAAGCCTGCAGATGGAATACGGAAAATAGTCCTAGCTACCAACATGGCTGAGACTAGCATCACCATCAATGATGTGGTTTTTGTAGTTGATTGTGGAAAAGCGAAGGAAACATCATATGATGCACTGAATAACACTCCTTGTTTGCTTCCATCTTGGATATCAAAGGCTGCAGCACGACAAAGAAAAGGAAGAGCTGGACGGGTTCAACCTGGCGAGTCTTTTCATCTGTACCCAAGATGTGTATATGATGCTTTTGCTGATTATCAACGACCAGAACTTTTGAGAATGCCATTACAGTCTTTGTGTTTGCAAATCAAAAGTCTGCAACTTGGAAGTATTTCAGAGTTTCTAGCAAAGGCATTGCAGTCACCTGAACCTTTATCGGTTCAAAATGCTGTTGAGTATTTGAAAACTATTGGAGCATTCGATGAGGAAGAGAATCTGACAGTGCTAGGTCGCCACTTATCAATGCTTCCAGTTGAACCTAAGCTTGGAAAAATGCTCGTCTATGGAGCTATTTTCAACTGTCTACATCCAATAATGACAGTTGTTGCTGGTCTTAGTGTAAGAGATCCTTTCCTAATGCCATTCGATAAGAAGGACCTTGCAGAGTTGGCAAAATCTCAATTTGCAGGTCGTGATTGTAGTGACCATATTGCACTTGTGAGAGCTTTTGAGGGTTGGAAAGATGCTGAAATGCGGCAATCTGGTTTTGAGTATTGTTGGAGAAATTTTCTTTCTGCTCAAACTCTAAAAGCCATAGATTCTTTGAGGAAACAGTTCTTTTGTTTGCTTAAGGATACCGGTTTGATTGATGAAACTTCTCAAAACTACAACATGTGGGACCATGATGAACATCTAATCCGTGCAGTTGTCTGTGCGGGACTTTTCCCAGGAATATGCTCTGTTGTGAACAAAGAGAAGTCAATAGCATTGAAAACGATGGAGGATGGCCAAGTTCTTCTATATTCTAGTTCTGTGAATGCATCGATACCTAAAATTCCATACCCATGGCTCGTGTTTAACGAGAAAGTGAAAGTGAATTCTGTTTTCCTTCGGGACTCTACTGGGGTGTCAGATTCTGTTCTACTTTTGTTTGGGGGCAATATTTCCAGTGGCGGACTGGATGGGCACCTTAAAATGCTGGAAGGGTATTTGGAGTTTTTTATGAATCCTGAATTGGCTGAAACTTATTTGAGATTAAAAAGAGAGCTAGATGAACTTATTCACAAAAAACTTCTGAATCCAAAGCTAGATTTACAATCGCATGTTGAGGTTCTGTCTGCAGTGAGATTGCTAGTCTCAGAGGATCAATGTGAAGGTAGATTTGTTTTTGGTCGAAAGGTGTCATTACCGCCAAAGAAGGCTTCAAAGGAGAGACAATCCGGCGGCAGTGGAGATAACTATAAAAATGAGCTTCAGACAGTTCTTGCAAGAGGAGGACACGAAATTCCCACTTATAAGACAAGACAACTAAAAAACAACCAGTTTCGATCTACAGTTATCTTCAATGGTTTAAATTTTGTTGGCCAGCCCTGTAGTAACAAGAAACTTGCAGAAAAGGAGGCAGCAGGAGAGGCGTTGCTATGGCTGAAGGGCGAGACTCATTCATCTTCGCAAGATATTGACCATGTCTCTCTACTTTTAAAGCCGAGTAAAAATAAAGCAAAGAAGGCTTCTACTCGTGGTGCCAAATGGGGTTAA 3963 42.44 MLGTVKATLSGTVSGTISRIVSGVVLGTLKPINVISDLPLPPLPLPLLLSLSPLLPCALDSGPPPSHTSLNRCFGELIANHEVLGDAGSSVGGELNGDILRVKYYDFLVEQDEVVDVRKIWSCKEGCFSSTMSMSLRPTSPFPFRRPPKGLEPLFRYLTLKNSQPLGLRNLQARSRLTPGVWCLSSSREMVEWKEKKLNLVRLRHRSVVFPFSQYLQNSNYGRFAYEDVSSDESDYEMGSPQQQMGASTLDNIDEWRWKLTMLLRNNEEKEIVSREKKDRRDFEHLSAIATRMGLFSRQYSKVVAFSKDPLPNYRPDLDDKRPQREVVLPFGLQKDVDAHLKLYLSKKSMSKGRGSFSDDPCSIYGIGGNTASNNVQQEPLTTNNIFREKFLRRISLQMRNQQQNWQDSPEGQKMDEFRTSLPAFKEKDTLLKAISENQVVVVSGETGCGKTTQLPQYILESEIYAAHGALCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGKDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPKIHIPGFTHPVRAHFLENILEMTGYRLTPYNQIDDYGQEKVWKMQKQTQSVKRRKSMIASSIEDALEAADFNGYSPQTRESLSCWNPDSIGFNLIEHILCYIVKKERPGAILVFMTGWDDINCLKDQLQSHPLLGDPSRVLLLACHGSMASSEQRLIFDKPADGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQPGESFHLYPRCVYDAFADYQRPELLRMPLQSLCLQIKSLQLGSISEFLAKALQSPEPLSVQNAVEYLKTIGAFDEEENLTVLGRHLSMLPVEPKLGKMLVYGAIFNCLHPIMTVVAGLSVRDPFLMPFDKKDLAELAKSQFAGRDCSDHIALVRAFEGWKDAEMRQSGFEYCWRNFLSAQTLKAIDSLRKQFFCLLKDTGLIDETSQNYNMWDHDEHLIRAVVCAGLFPGICSVVNKEKSIALKTMEDGQVLLYSSSVNASIPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNISSGGLDGHLKMLEGYLEFFMNPELAETYLRLKRELDELIHKKLLNPKLDLQSHVEVLSAVRLLVSEDQCEGRFVFGRKVSLPPKKASKERQSGGSGDNYKNELQTVLARGGHEIPTYKTRQLKNNQFRSTVIFNGLNFVGQPCSNKKLAEKEAAGEALLWLKGETHSSSQDIDHVSLLLKPSKNKAKKASTRGAKWG 1320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6977101 6995097 - BLOR05462 Blo13g00181 68576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00181 1320 SMART ha2_5 884 975 IPR007502 GO:0004386
Blo13g00181 1320 CDD SF2_C_RHA 668 830 - -
Blo13g00181 1320 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 432 599 IPR014001 -
Blo13g00181 1320 SUPERFAMILY dsRNA-binding domain-like 1218 1298 - -
Blo13g00181 1320 Gene3D - 372 600 IPR027417 -
Blo13g00181 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 998 IPR027417 -
Blo13g00181 1320 SMART ultradead3 420 608 IPR014001 -
Blo13g00181 1320 Pfam Double-stranded RNA binding motif 1222 1284 IPR014720 -
Blo13g00181 1320 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 688 862 IPR001650 -
Blo13g00181 1320 SMART DRBM_3 1222 1285 IPR014720 -
Blo13g00181 1320 PANTHER ATP-DEPENDENT RNA HELICASE 216 1223 - -
Blo13g00181 1320 SMART helicmild6 716 822 IPR001650 -
Blo13g00181 1320 CDD DEXHc_RHA-like 438 598 - -
Blo13g00181 1320 Pfam Helicase associated domain (HA2) 885 958 IPR007502 GO:0004386
Blo13g00181 1320 Gene3D - 864 965 - -
Blo13g00181 1320 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 216 1223 - -
Blo13g00181 1320 Pfam DEAD/DEAH box helicase 432 583 IPR011545 GO:0003676|GO:0005524
Blo13g00181 1320 Gene3D - 1204 1289 - -
Blo13g00181 1320 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1041 1123 IPR011709 -
Blo13g00181 1320 Gene3D - 682 840 IPR027417 -
Blo13g00181 1320 Pfam Helicase conserved C-terminal domain 690 821 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00181 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 1770.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00853 Blo13g00181 CCT
Blo13g00181 Blo16g00111 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00746 Blo-Chr1:9839986 Blo13g00181 Blo-Chr13:6977101 0 dispersed
Blo07g01300 Blo-Chr7:33238566 Blo13g00181 Blo-Chr13:6977101 0 dispersed
Blo10g00327 Blo-Chr10:4932434 Blo13g00181 Blo-Chr13:6977101 2.23E-08 dispersed
Blo13g00181 Blo-Chr13:6977101 Blo13g00669 Blo-Chr13:29416524 0 dispersed
Blo13g00181 Blo-Chr13:6977101 Blo03g00294 Blo-Chr3:5808694 1.80E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00181 Blo_Chr13 FPKM 7.979764 8.469075 32.120251 31.399677 24.285086 24.449001 24.906237 7.939786 6.751768 7.245553