Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00200 ATGGTGACGGTAATGGTAGCGAGGCCATATGATGTATCCCTATGTGGGGGTGACGGAAAACAACATGACTATATGATGTATTCATTCCCTCGGTATATGAAACGGATGGGAGATTTGGTGGCTATCCATTGGTGGGGACACTATATGATGTATCTCCTCATCGGGGTGATGGTTAACCACGTGGACTCTAGTGTTCATCATTTCTCTTGTACGGAAATCTCCAATGTCTTCAACAAAAAGAGAATGGTGACGGTCATGGTAGCGAGGCCATATGATGTATCCTCATGTATATACGAGAAACAAGAGAACATGTCAAAGACAGTTGATGAAAGATTTGCACGGGTGGATTTTGTGGCTGGCTGGGCTAAAGAATCAAGGACCGTTGGTGGCGAAGGCGGAGGACGAGGACCATTCATGGCCAAAGGCCCTTACTCCAACTCAAACCCTAACCCTAACCCTAAGTCCAACAAGAGGCAGTTTCATGGTGATAATAACGGCTTCCAGATGGAGGATTTTCCTGCCGCCACGCAATCGGCATCTGATGATGCTTCTTCGATCAGTCATCATCGCAGATCGTCAAACGGCACCGAGTTCAGTAATTACGTCAACTTCAATGTTAGTTCCTACACCAGAGTGCAGCTGATGGATCTCAAGATCCGACTTCAAGTTGAGCTTGAGCAGATTCGGAATTTGAAAAGTCAAATAGGGGCCGGCAAGCTGCATCCCAGTAACAATAACTTGAAGAAGTCGTCCAAGATATCAGGACACAAAAGACCAACACCGCCTAATTCGGGGAAAAATTTGAGTCGCTCGAATTCTGAAGTAGGGAGTCTGATGAAGGCGTGCTCCCAAATTTTGACAAAGGTGATGAAACATAAGCACAGCTGGATTTTTAACAAGCCGGTCGATGTGGTTGGTATGGGTCTCCACGATTATCTTGATATAATTAAGTATCCGATGGATCTAGGATCTGTCAAAGCGAAATTAGGCAAAAATGTTTATACTTCACCTGCAGATCTTGCTGCCGATGTGCGGCTGACTTTCCAAAATGCCATGGCATATAATCCACGGGGTCACGATGTGCACGCCATGGCAGAGCAGTTGTTGATTATGTTTGAAGAATTGTTTCAGCCTGTGAGGAAGATATTGGAGGAAGATAGGCAGGTAGATCCTGTTTACGATGAGGAATTGCAAGCGAGTTCTTGGAATCACGTTCAGTTGGAAAGAGTGACAAAGAAGGATAATCCCAAGCATATCCCTAAGAAATTGGACTCTTCTAGGGCCCCGGTGCAGGCACCGGCCAGTTCGTCACACCTTCCATTGGTACAGTCGCCAGTTAAAACCCCATCTCCGGTGCGTGCTCCCCCAGTGAAGCATTTGAGGCAGCCAAAGCCAAAGGCAAAGGATCCTAACAAGAGAGACATGACTTTGGAGGAGAAGCACCGGTTGGGACTTGGGTTGCAGAGTTTGCCCCAAGAGAAAATGGATCAGGTGGTGCAAATCATAAAGAAAAGAAATGGCCATCTGAAGCAGGATGGGGACGAAATTGAGCTGGACATTGAAGCCGTAGATACTGAGACCCTTTGGGAGCTTGATCGGCTTGTTACTAATTGGAAGAAAATGGTGAGCAAAATTAAGCGTCAGGCACTCATGTGCAACATGAATTCAGCTTCAAATAAATCCAATGGGGAATTACCTCTGATGGAGAAACTTGAAGTTGGAACAGAGGCAAAAAAACCGAGGAAGGGGGAGGCTGGTGAGGAAGACGTGGACATTGGCGATGATGAAATGCCAATGACTGGTTTTCCTCCAGTAGAAATTGAGAAAGATGCGGCGGGAGGACATGCCAGTAGTAGTTCTAGTGGCATCAGCGGGTCAAGTAGTGACGATTCTTCTTCATCAAGTGGTAACCCAAATATAAGTTTTGACACTGATTTTAGAAATTTCATCTTTACAAACGAAAGATTCCAATTGGTGGCCTATTTTTGCAGGGTGGGAGGGAATGGCTGGAGTAAAATTGATGAGAAAAGGGTGGTTGTTGGAGTGGAAGAAAGAAGGTATCTTGGGCAGACGCGCGCAGCTTGTATTGACTGTGTGGGGGTAGCAGCAATTGGCATAAGAATGAAGATCAGCTGA 2136 45.97 MVTVMVARPYDVSLCGGDGKQHDYMMYSFPRYMKRMGDLVAIHWWGHYMMYLLIGVMVNHVDSSVHHFSCTEISNVFNKKRMVTVMVARPYDVSSCIYEKQENMSKTVDERFARVDFVAGWAKESRTVGGEGGGRGPFMAKGPYSNSNPNPNPKSNKRQFHGDNNGFQMEDFPAATQSASDDASSISHHRRSSNGTEFSNYVNFNVSSYTRVQLMDLKIRLQVELEQIRNLKSQIGAGKLHPSNNNLKKSSKISGHKRPTPPNSGKNLSRSNSEVGSLMKACSQILTKVMKHKHSWIFNKPVDVVGMGLHDYLDIIKYPMDLGSVKAKLGKNVYTSPADLAADVRLTFQNAMAYNPRGHDVHAMAEQLLIMFEELFQPVRKILEEDRQVDPVYDEELQASSWNHVQLERVTKKDNPKHIPKKLDSSRAPVQAPASSSHLPLVQSPVKTPSPVRAPPVKHLRQPKPKAKDPNKRDMTLEEKHRLGLGLQSLPQEKMDQVVQIIKKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALMCNMNSASNKSNGELPLMEKLEVGTEAKKPRKGEAGEEDVDIGDDEMPMTGFPPVEIEKDAAGGHASSSSSGISGSSSDDSSSSSGNPNISFDTDFRNFIFTNERFQLVAYFCRVGGNGWSKIDEKRVVVGVEERRYLGQTRAACIDCVGVAAIGIRMKIS 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8333260 8339544 + BLOR05481 Blo13g00200 68595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00200 711 MobiDBLite consensus disorder prediction 573 588 - -
Blo13g00200 711 MobiDBLite consensus disorder prediction 143 163 - -
Blo13g00200 711 SUPERFAMILY Bromodomain 264 385 IPR036427 GO:0005515
Blo13g00200 711 Coils Coil 214 234 - -
Blo13g00200 711 MobiDBLite consensus disorder prediction 407 475 - -
Blo13g00200 711 Gene3D - 241 394 IPR036427 GO:0005515
Blo13g00200 711 MobiDBLite consensus disorder prediction 236 273 - -
Blo13g00200 711 Gene3D - 468 544 IPR038336 -
Blo13g00200 711 ProSiteProfiles NET domain profile. 465 546 IPR027353 -
Blo13g00200 711 MobiDBLite consensus disorder prediction 614 636 - -
Blo13g00200 711 MobiDBLite consensus disorder prediction 407 424 - -
Blo13g00200 711 PANTHER OSJNBA0053K19.4 PROTEIN 154 636 - -
Blo13g00200 711 PRINTS Bromodomain signature 343 362 IPR001487 GO:0005515
Blo13g00200 711 PRINTS Bromodomain signature 309 325 IPR001487 GO:0005515
Blo13g00200 711 PRINTS Bromodomain signature 293 306 IPR001487 GO:0005515
Blo13g00200 711 PRINTS Bromodomain signature 325 343 IPR001487 GO:0005515
Blo13g00200 711 MobiDBLite consensus disorder prediction 573 636 - -
Blo13g00200 711 MobiDBLite consensus disorder prediction 175 194 - -
Blo13g00200 711 Pfam Bromodomain extra-terminal - transcription regulation 475 536 IPR027353 -
Blo13g00200 711 MobiDBLite consensus disorder prediction 128 170 - -
Blo13g00200 711 Pfam Bromodomain 282 366 IPR001487 GO:0005515
Blo13g00200 711 PANTHER TRANSCRIPTION FACTOR GTE2 154 636 - -
Blo13g00200 711 MobiDBLite consensus disorder prediction 429 444 - -
Blo13g00200 711 ProSiteProfiles Bromodomain profile. 290 362 IPR001487 GO:0005515
Blo13g00200 711 MobiDBLite consensus disorder prediction 237 273 - -
Blo13g00200 711 SMART bromo_6 271 381 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00200 - - - csv:101216341 639.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00043 Blo-Chr3:1760290 Blo13g00200 Blo-Chr13:8333260 1.44E-27 dispersed
Blo03g00044 Blo-Chr3:1760890 Blo13g00200 Blo-Chr13:8333260 2.46E-161 dispersed
Blo04g00075 Blo-Chr4:656935 Blo13g00200 Blo-Chr13:8333260 2.22E-28 dispersed
Blo13g00200 Blo-Chr13:8333260 Blo15g00581 Blo-Chr15:12339255 6.76E-70 dispersed
Blo13g00200 Blo-Chr13:8333260 Blo02g00900 Blo-Chr2:34753856 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00200 Blo_Chr13 FPKM 17.231901 16.178923 16.95166 17.518274 24.372503 27.493052 25.532066 4.11313 3.875811 3.867102