Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00201 ATGCTTCTGCGGAGCTCTCACCTCCAATCTCTTCCGTGCCCTCTTCGTCTGTCACCCGAGACACAAATCCAGCCTCCCTCCTCTCGCATCTGGTCTCTGCAGTTGGCGGCAGTCTTATCACAAAGTATAGGCTGTTCTATGATGAGTAGTAAAAAGAGGAGCTCGAACTCTGTGCAAGAGGCAGAGGGTCAACTGGATTTACCCACTGCAGAAGAGGTAGAGCAGAAGTCTTCTAAGAAGAAAATGAGAAGCGAAAAGGGGAAGAAAGCCGAAGTTGATGTGAATGCTAGTTCAATAAAACCTATGGAGAGAACAAAGAAAAGGAAAGCATTAGATAAAGAGCGACGGCATGCTACTGTTGAGAATCAAGGTGCCCAAAAAAAATCTGTTGAGACTAAGCCATTGATGGTGTCTCTGTCATGTAGTGGTCTCCCTGAGTTCCATATCAGTGTCTTCAAAGACTTGGCAGCAGCTGATGTTTCTGTGAGAGAAGCTGCTGTAGAAACCTTGGTGATGGAGTTGCAGGAAGTTCAAAAAGCCTATGATAAGTTAGAGAATAAGGATGTGGAGGAAGGTGGTTTGAAATTGGAAGCTGAAAAGGATGATGGCTTGGACAATTGTGCACCTTCCATTAAATATGCTGTTCGTAGATTGATTCGGGGTGTTTCTTCTTCTAGAGAGTGTGCAAGGCAGGGTTTTGCACTAGGTTTAACTGTTTTGGTGGGTACAATCCCCAACATCAAGGTAGGCTCACTGATGAAACTCATTGCTGATTTGTTGGATGTTTCTTCATCAATGAAAGGCCAGGAAGTAAAGGACTGTCTCTTAGGTCGCTTGTTTGCATATGGTGCCCTTAGCCGTTCAGGAAGACTTACACAGGAGTGCTACTCGAATGAATACACTTCTTACATTAAGGAGTTCACCACTATTCTCATATCCCTTGCAAGCAAAAAAAGATACTTACAAGAGCCAGCTGTTGCAATTATTCTAGATTTAATAGAAAAGTTGCCGATAGAAGCATTGCTGAATGATGTCCTTGAAGCTCCAGGAATTCAAGAATGGTTTGATGGGGCTATTGAAGTTGGCAATCCTGATGCCTTGCTTCTGGCTTTGAAATTGAGAGAGAGAATTTCTTTAGACAATGCTTCATTCGCCAAGCTTTTGCCAAATCCTTATAGCACTGACAAACTTTTTGCTGCTGACTGTCTTTCCTCTCTCTCCAATTGCTTGAAGGAGTCTACATTTTGCCAGCCTCGAATACACAGTTTATGGGCCGTTCTTCTGAAAATACTTTTGCCTGACGTGGTTTTGCAATCTGAAGAATCATTGTCAGTTTCTTCTTTAAAGAAGCACAAAAAAAATCGTAAAAGTGGCTCTTCTGAAGAAGAAACTTCTAAGAATTTTCAGAATTTTTTGGAAGTTGTGATCGAAGGTTCTCTTCTCTCGTCATCGCATGATCGTAAACATTTGGCCTTTGATGTTCTACTCACTCTCTTACCAAGACTTCCTGCATCTTTTATATCAGTCGTGCTCTCATATAAAGTTGTTCAATGCATAATGGATATACTTTCTACAAAGGATTCTTGGCTGTATAAAGCTGTGCAATTTTTTATGAAAGAATTATCAAATTGGGTAATGCACGATGATATGAGAAGAGTAGCTGTCATTGTGGCTTTACAAAAGCACAGCTATGGAAAGTTTGATTGCATTACGAGGACAAAAACAGTTAAAATTTTGATGTCAGAATTCAAATCAGAAAATGGCTGTTTGCTTTTTATTCAGAACTTAGCAAACTTGTTTGTGGATGAAAGCCATACTTCTGAAGAGCCCTCTGACCAGAGTCAAACGACTGATGACAACTCTGAGGTTGGCTCAGTGGAGGAAAAGGATTCAATTGGGACATTGGGTAACTCAGACTTTTTGAGAACATGGGTCGTGGAATCCCTCCCAAGCGCATTAAAAAATTATAGTTTGGAGGCTGACGCAAAGTTTCGGGTGCAAAAAGAAATTTTGAAATTTTTAGCAGTTCAGGGTCTCTTCACTGCTTCACTTGGCTCAGAAGTGACATCTTTTGAATTGCAGGAGAAATTTAGATGGCCAAAAGCAGCCACATCAAGTTCCCTTTCCATTATGTGTATTGAACAACTGCAGTTATTGTTGGCAAATGCTCAAAAGGCTGAAGGGTCTCGTGATTTGGCTAAGAGCTCTGAAGCAAATGATATTGGGGCTTATTGCATGAGGTTTCTTAGTACCATGCGCAACATTCCATCAGTTTCTCTCTTTAGAAGTTTGAATGATGATGATGAAAATGCTTTAAAAAAACTACAGGAGATGGAAACTGAACTTTGGAGAGAGGAAAAGAATTGTGGACTGAGTATTGAGGCAGATAAATTGCATGCCCTGCGGTGCTTGCTTATTCAATTGTTTTTGCAAATACTCCTTCGACCAGATGATTTTTCTGAAGCTGCATTTGAACTAATTATATGTTGTAAGAAAGCATTCAGAGCCTCTGATCTTCTAGGATCCACTGGGGAAGATGAACAGGAAGATGATGAAACACCTGAGTTAATGGATGTTCTTGTGGATACATTGCTTTCATTGCTGCCACAGTCTTCAGCTCCCATGAGAACAGCAATTGAGCAGAACTTGTTGGTAGAAGGTTTGTTTAATTTTTTATTTGTTGTTGTTTGGTATTCAGTAAGTTTGCTGATTATTCGGCAAGAATATTTTTCTTGCTATTTTACTTGCCAATGCACTAATCTTTTGAAACTGAACGTCCCTATTGATGTTTTTAAGTACTTCTGTGAACAAATCACGGATGATGGTTTACTAAGAATGTTAAGAGTCATCAAGAAAAATTTGAAACCAGCTAGGCATCAGAATGCAGAAAGTTCTGACAACGATGACGAAGATGATGAAGATTTTCTGGACGTCGAAGAAGACGAAGAAATGGATGAAGCTGAGATTGGTGAAACAGGAGAGAGTGATGAGCAGACAGACGAATCTGAAGCTGTAGTAGGTAGAGTTGATGAAGTAGACAAAGAACTTTCTGAAAATTCTGATGATTCTGATGGAGGGATGGATGATGATGCAATGTTTCGAATGGATACTTATCTTGCCCAAATTTTCAGAGAGAGAAAAAATCAGGTTGGGAGTGAAAGTGCTCAATCTCAGCTCATGTTATTTAAGCTTCGTGTTCTCTCGCTGCTGGAAATCTACTTGCATAAAAATCCGGGTAGCCCGCAGGTGCTATTGGTCTATTCAAACTTGGTTCGGGCACTTATAAGCACGCATTCTGCCGAAGGCAGTGAGCAGCTTGCACAACGAATATGGGGGATTCTGCAAAAGAAAGTCCTCAAAGCTAAAGATTATCCTCAGGGTGAAGCTGTTCAATTAGCTACACTTGAATCTTTACTGGAAAAGAGTCTCAATCTAGCCTCAAAACCGTTCAGAAGAAAGAAATCTATTTCAAACCCATCCAAGAAACTGCAGTCGGCCTCCTGGAATCGACACAAGATGGTCACTTCCCTTGGTCAAAATTCAACATTTTGGATCCTGAAGATCGTTGATGCTAAAAGTTTGTCCGAAACAGAGTTGCAGAGAGTATTTGACATCTTTGAAGGTGTATTTGCCCACTATTTCAACAGTAAAAAGTCTCAGCTGAAATTTGAATTTCTGAAAGAAATCGTCAAACGAAGGCCATGGATTGGGCATCATCTGTTGGGGTTCCTTTTGGACAAATGTGGAATTGCAAACTCAGAATTCAGAAGGGTCGAGGCATTAGATTTGGTCATTGAGATATTGACATCACGCATTTCCTTGGAAATCAGCTCAGACGATACACAGAAGTCAGCAAAAGCCCATTTTCGGAAACTTACGAAGTTGAAATCAATGACACTAATGTCCTCCGAGATCATCGGCGCAGACCGTTCGCGGAATTTGGTGAAAATGCATCTCAACAAAATATGTGAGTTGATAAAGGAGATGCTAACAAACATGCCAGAAAAGCCGGCAAGACGTTCCGGAGTGAGAAAGTTCTGCGTGTGGGTATTCAACATCATGGCTTCTCTCAACTTAACCAAGTTGTTTTTGGAGAGTCTGCCAGCGGAAGGCCATGCTGCTTGTGAAACACAACTTGGGGAGCAGTTCAATAGTTTAAAGCAGGCGGAGTAG 4173 40.95 MLLRSSHLQSLPCPLRLSPETQIQPPSSRIWSLQLAAVLSQSIGCSMMSSKKRSSNSVQEAEGQLDLPTAEEVEQKSSKKKMRSEKGKKAEVDVNASSIKPMERTKKRKALDKERRHATVENQGAQKKSVETKPLMVSLSCSGLPEFHISVFKDLAAADVSVREAAVETLVMELQEVQKAYDKLENKDVEEGGLKLEAEKDDGLDNCAPSIKYAVRRLIRGVSSSRECARQGFALGLTVLVGTIPNIKVGSLMKLIADLLDVSSSMKGQEVKDCLLGRLFAYGALSRSGRLTQECYSNEYTSYIKEFTTILISLASKKRYLQEPAVAIILDLIEKLPIEALLNDVLEAPGIQEWFDGAIEVGNPDALLLALKLRERISLDNASFAKLLPNPYSTDKLFAADCLSSLSNCLKESTFCQPRIHSLWAVLLKILLPDVVLQSEESLSVSSLKKHKKNRKSGSSEEETSKNFQNFLEVVIEGSLLSSSHDRKHLAFDVLLTLLPRLPASFISVVLSYKVVQCIMDILSTKDSWLYKAVQFFMKELSNWVMHDDMRRVAVIVALQKHSYGKFDCITRTKTVKILMSEFKSENGCLLFIQNLANLFVDESHTSEEPSDQSQTTDDNSEVGSVEEKDSIGTLGNSDFLRTWVVESLPSALKNYSLEADAKFRVQKEILKFLAVQGLFTASLGSEVTSFELQEKFRWPKAATSSSLSIMCIEQLQLLLANAQKAEGSRDLAKSSEANDIGAYCMRFLSTMRNIPSVSLFRSLNDDDENALKKLQEMETELWREEKNCGLSIEADKLHALRCLLIQLFLQILLRPDDFSEAAFELIICCKKAFRASDLLGSTGEDEQEDDETPELMDVLVDTLLSLLPQSSAPMRTAIEQNLLVEGLFNFLFVVVWYSVSLLIIRQEYFSCYFTCQCTNLLKLNVPIDVFKYFCEQITDDGLLRMLRVIKKNLKPARHQNAESSDNDDEDDEDFLDVEEDEEMDEAEIGETGESDEQTDESEAVVGRVDEVDKELSENSDDSDGGMDDDAMFRMDTYLAQIFRERKNQVGSESAQSQLMLFKLRVLSLLEIYLHKNPGSPQVLLVYSNLVRALISTHSAEGSEQLAQRIWGILQKKVLKAKDYPQGEAVQLATLESLLEKSLNLASKPFRRKKSISNPSKKLQSASWNRHKMVTSLGQNSTFWILKIVDAKSLSETELQRVFDIFEGVFAHYFNSKKSQLKFEFLKEIVKRRPWIGHHLLGFLLDKCGIANSEFRRVEALDLVIEILTSRISLEISSDDTQKSAKAHFRKLTKLKSMTLMSSEIIGADRSRNLVKMHLNKICELIKEMLTNMPEKPARRSGVRKFCVWVFNIMASLNLTKLFLESLPAEGHAACETQLGEQFNSLKQAE 1390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8339993 8348170 - BLOR05482 Blo13g00201 68596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00201 1390 MobiDBLite consensus disorder prediction 72 93 - -
Blo13g00201 1390 MobiDBLite consensus disorder prediction 100 122 - -
Blo13g00201 1390 Pfam DNA polymerase phi 213 881 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Blo13g00201 1390 Pfam DNA polymerase phi 929 1074 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Blo13g00201 1390 MobiDBLite consensus disorder prediction 606 631 - -
Blo13g00201 1390 MobiDBLite consensus disorder prediction 981 1030 - -
Blo13g00201 1390 MobiDBLite consensus disorder prediction 50 127 - -
Blo13g00201 1390 MobiDBLite consensus disorder prediction 1001 1030 - -
Blo13g00201 1390 MobiDBLite consensus disorder prediction 606 621 - -
Blo13g00201 1390 Coils Coil 167 187 - -
Blo13g00201 1390 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 139 881 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Blo13g00201 1390 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 930 1388 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Blo13g00201 1390 MobiDBLite consensus disorder prediction 981 1000 - -
Blo13g00201 1390 Coils Coil 761 788 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00201 K02331 POL5, MYBBP1A; DNA polymerase phi [EC:2.7.7.7] - csin:114310157 1642.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00891 Blo-Chr1:17889009 Blo13g00201 Blo-Chr13:8339993 0 dispersed
Blo13g00201 Blo-Chr13:8339993 Blo19g00208 Blo-Chr19:10235428 5.73E-124 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007466 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00201 Blo_Chr13 FPKM 5.413793 6.028765 38.123737 36.460457 239.631958 227.932007 237.533188 17.842171 19.032 16.80134