Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00203 ATGAACAAGGTTGAAAGTTGGGAGAAAGAGATGGAAGAGATGAAACTTGAGTTGCAACACATTCCGGGAATAGAACAGTCCATGGAATTGTTGTCTCAAAATGTTGCAAAACTTTTACAGTTGATGGAGGATCAACAACAATTCCTCAAATTTGTGGCTTCGGAAAAATTTTCAGTGGAACGAGTTTCCTTGGAACCAAAATCTCATGTGATGTTTCCAGTCGCAGTAACATGTGGGAATACCTTTGTTTTAAAGCCCTCTGAAAAGGATCCAGGGGCGTCTATAATTCTGGCAGAGTTGGCAACAGAGGCTGGGTTGCCTGATGGTGTCTTAAACATTGTTCACGGCACCAATGAGATTGTTAACGCCATTTGTGATGCCGACGACATAAGAGCTGTATCATTTGTGGGTTCTAATACTATTCAAGCGGTTGTGTATTTTGAAACTGATGTTTCACTACTCTTCTTGTTCTGTGTCCTCAACTCTCTGTTTTGGATGTTTACAGTTCCCGCTAGTTATAAGCTTTCAGCGGGAATGCACATTTATTCAAGAGCGTCAGCCAAAGGAAAACGTTCTAATATGGGAGCCAAGAATCACGCTATTATAATGCCTGACGCAAGTATAGATGCTACTCTGAATTCTTTAGTCGCTGCTGGTTTTGGTGCTGCAGGACAGAGATGCATGGCACTTAGCACGGCTGTATTTGTTGGTGGCTCAGAGGCATGGGAGAAAAAACTTGTGGAACGAGCCAATGCTTTGAAGGTAAACTCAGGAATGGAATCTGATGCAGATCTTGGTCCAGTAATTAGCAAACAGGCAAAAGAAAGAATCTGCAGATTAATTGAATCGGGTGTCCAAAGTGGAGCAAGGCTGCTGCTTGACGGGAGAAGTATTGTGGTATTTTTTCTTGCCTTATTGTTCGGCTTCTTTGATTTGAAACTTTATCATTACCAATTTTATAATTTCACATGTTTATGTAGCATCTGGCAATCAATGTTTAAGGATGAAGGGAAATCAGAAGTAGTAGAAAACAAGAAGATAGAATTTGATGAGAAACTTTAG 1062 40.68 MNKVESWEKEMEEMKLELQHIPGIEQSMELLSQNVAKLLQLMEDQQQFLKFVASEKFSVERVSLEPKSHVMFPVAVTCGNTFVLKPSEKDPGASIILAELATEAGLPDGVLNIVHGTNEIVNAICDADDIRAVSFVGSNTIQAVVYFETDVSLLFLFCVLNSLFWMFTVPASYKLSAGMHIYSRASAKGKRSNMGAKNHAIIMPDASIDATLNSLVAAGFGAAGQRCMALSTAVFVGGSEAWEKKLVERANALKVNSGMESDADLGPVISKQAKERICRLIESGVQSGARLLLDGRSIVVFFLALLFGFFDLKLYHYQFYNFTCLCSIWQSMFKDEGKSEVVENKKIEFDEKL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8401545 8414412 - BLOR05484 Blo13g00203 68598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00203 353 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 220 231 IPR016160 GO:0016491
Blo13g00203 353 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 70 146 - -
Blo13g00203 353 SUPERFAMILY ALDH-like 177 300 IPR016161 GO:0016491
Blo13g00203 353 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 70 146 IPR010061 GO:0004491
Blo13g00203 353 Pfam Aldehyde dehydrogenase family 177 296 IPR015590 GO:0016491
Blo13g00203 353 Pfam Aldehyde dehydrogenase family 71 144 IPR015590 GO:0016491
Blo13g00203 353 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 68 152 IPR016162 GO:0016491
Blo13g00203 353 SUPERFAMILY ALDH-like 72 145 IPR016161 GO:0016491
Blo13g00203 353 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 176 300 IPR010061 GO:0004491
Blo13g00203 353 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 195 297 IPR016163 GO:0016620
Blo13g00203 353 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 177 194 IPR016162 GO:0016491
Blo13g00203 353 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 176 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00203 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - pop:7487827 322.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00732 Blo-Chr5:25866182 Blo13g00203 Blo-Chr13:8401545 3.23E-78 dispersed
Blo13g00203 Blo-Chr13:8401545 Blo15g00791 Blo-Chr15:27024539 1.09E-17 dispersed
Blo13g00203 Blo-Chr13:8401545 Blo01g00700 Blo-Chr1:8424355 1.11E-15 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo08g00284 . 16 502 Aldehyde Dehydrogenase Gene Family AT3G24503 73.2 9.2e-216 746.5
Blo16g00815 . 70 586 Aldehyde Dehydrogenase Gene Family AT3G24503 66.4 8.7e-198 686.8
Blo16g00811 . 38 523 Aldehyde Dehydrogenase Gene Family AT3G24503 67.4 4.8e-188 654.4
Blo14g00484 . 5 444 Aldehyde Dehydrogenase Gene Family AT3G24503 65.3 1.8e-187 652.5
Blo01g00700 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G24503 68.7 4.5e-186 647.9
Blo01g00702 . 3 468 Aldehyde Dehydrogenase Gene Family AT3G24503 66.0 2.7e-175 612.1
Blo16g00812 . 1 423 Aldehyde Dehydrogenase Gene Family AT3G24503 69.1 2.8e-172 602.1
Blo01g00398 CCT,ECH 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 4.7e-159 558.1
Blo16g01155 . 65 567 Aldehyde Dehydrogenase Gene Family AT3G24503 52.6 1.3e-153 540.0
Blo01g00398 CCT,ECH 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 4.7e-250 860.5
Blo16g01155 . 37 567 Aldehyde Dehydrogenase Gene Family AT3G48000 73.9 1.0e-236 816.2
Blo08g00284 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.6 2.3e-164 575.9
Blo16g00815 . 86 586 Aldehyde Dehydrogenase Gene Family AT3G48000 53.3 1.9e-158 556.2
Blo16g00811 . 38 523 Aldehyde Dehydrogenase Gene Family AT3G48000 52.3 3.3e-150 528.9
Blo01g00700 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 7.2e-150 527.7
Blo11g00908 CCT,ECH 1 361 Aldehyde Dehydrogenase Gene Family AT3G48000 63.0 3.5e-144 508.8
Blo01g00702 . 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 53.2 2.8e-141 499.2
Blo16g00812 . 1 423 Aldehyde Dehydrogenase Gene Family AT3G48000 54.1 1.3e-138 490.3
Blo14g00484 . 18 444 Aldehyde Dehydrogenase Gene Family AT3G48000 50.5 8.3e-138 487.6
Blo01g00398 CCT,ECH 1 384 Aldehyde Dehydrogenase Gene Family AT1G23800 76.2 1.9e-171 599.0
Blo16g01155 . 46 421 Aldehyde Dehydrogenase Gene Family AT1G23800 74.5 1.6e-165 579.3
Blo16g00815 . 65 439 Aldehyde Dehydrogenase Gene Family AT1G23800 51.7 1.3e-103 373.6
Blo08g00284 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 1.2e-101 367.1
Blo16g00811 . 43 373 Aldehyde Dehydrogenase Gene Family AT1G23800 52.0 8.9e-92 334.3
Blo01g00700 . 3 308 Aldehyde Dehydrogenase Gene Family AT1G23800 55.9 2.0e-91 333.2
Blo01g00702 . 3 314 Aldehyde Dehydrogenase Gene Family AT1G23800 53.2 6.2e-85 311.6
Blo11g00908 CCT,ECH 1 212 Aldehyde Dehydrogenase Gene Family AT1G23800 60.7 1.7e-82 303.5
Blo16g00812 . 1 267 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.5e-80 295.8
Blo16g00548 . 273 756 Aldehyde Dehydrogenase Gene Family AT4G34240 68.8 3.9e-196 681.4
Blo12g01125 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.0 1.1e-177 620.2
Blo12g01125 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 4.0e-180 627.9
Blo16g00548 . 344 753 Aldehyde Dehydrogenase Gene Family AT1G44170 68.0 8.4e-162 567.0
Blo16g00062 . 67 461 Aldehyde Dehydrogenase Gene Family AT1G44170 52.4 8.3e-117 417.5
Blo08g00098 . 1236 1594 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 4.6e-99 358.6
Blo16g00062 . 1 460 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 2.7e-180 628.6
Blo08g00098 . 1236 1596 Aldehyde Dehydrogenase Gene Family AT4G36250 57.3 1.4e-123 440.3
Blo02g00869 . 1 484 Aldehyde Dehydrogenase Gene Family AT1G79440 76.4 6.1e-218 753.8
Blo15g00791 . 105 637 Aldehyde Dehydrogenase Gene Family AT1G79440 66.6 1.3e-204 709.5
Blo15g00637 . 181 439 Aldehyde Dehydrogenase Gene Family AT1G79440 77.2 1.7e-114 410.2
Blo15g00639 . 1 238 Aldehyde Dehydrogenase Gene Family AT1G79440 77.7 2.9e-103 372.9
Blo05g00732 . 37 456 Aldehyde Dehydrogenase Gene Family AT2G14170 62.2 2.6e-156 549.3
Blo13g00203 . 71 300 Aldehyde Dehydrogenase Gene Family AT2G14170 69.8 2.9e-83 306.6
Blo13g00204 . 42 242 Aldehyde Dehydrogenase Gene Family AT2G14170 54.0 6.8e-48 189.1
Blo13g00042 BCT 812 1278 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 7.4e-234 806.6
Blo15g00282 BCT 102 561 Aldehyde Dehydrogenase Gene Family AT1G74920 80.7 1.2e-226 782.7
Blo13g00042 BCT 816 1278 Aldehyde Dehydrogenase Gene Family AT3G48170 80.1 1.4e-232 802.4
Blo15g00282 BCT 99 563 Aldehyde Dehydrogenase Gene Family AT3G48170 79.1 4.3e-229 790.8
Blo16g00906 . 1 459 Aldehyde Dehydrogenase Gene Family AT2G24270 88.2 9.8e-242 832.8
Blo16g00194 . 26 460 Aldehyde Dehydrogenase Gene Family AT5G62530 82.1 4.3e-214 741.1
Blo12g00082 . 3 588 Aldehyde Dehydrogenase Gene Family AT3G66658 82.9 7.7e-294 1006.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00203 Blo_Chr13 FPKM 0.584499 0.725057 0.63724 0.345234 0.132195 0.164046 0.231779 4.045671 4.009663 4.100074
Blo13g00203 Blo_Chr13 FPKM 0.584499 0.637603 0.529784 0.446912 0.132195 0.164046 0.079231 3.836639 3.869009 3.896151