Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00238 ATGGTTGATTTATCATTTTTCCTACCCAAAAATTCCTCTGATGAATCCAGCGTTACAGCAGCACACGCTGCTCTGAAACTTCGATTCGCTGGATGGGCAGTTCTGATTTCTGGTTTGAAGGCTCAAATGGATAATGGAGGTGGTCGATGCACAAAGGTTCCTCGAAATGCAAATATGGAGAAACTACGCAATGAATATTTATTTCCAGAGATTTCAAGGCTCGAGCTTCAACATTTAGAAAAATACCCACATGCAGAAGTGATAAGCCTTGGGATTGGTGATACCACAGAACCTCTACCAGACGTCATAGCGTCAAGCATGGCTGATTACGCTCTTGCGCTCTCAACCTCCAAAGGTTATAGAGGCTATGGACCCGAGCAGGGCAACAAGTCTTTAAGGAAGGCAATTGCTGAGACATTCTACAAGGATATACCAGTAGAAGACACAGAAGTTTTTGTGTCAGATGGTTCACAATGTGACATTACTCGCCTTCAGCTGCTTTTGGGTTCTAACGTAACAATAGCTGTGCAGGACCCATCTTTCCCGGCATATATAGATTCAAGTGTAATCATAGGTCAGGCTGATGATTATGAAGATAAAGTTGGAAGGTATAGAAACATTAAATACATGAGATGTGGGCCTGAAAACAATTTCTTTCCGAATTTGTCAACGGCTGCAAGGGCTGACATAATTTTCTTTTGCTCTCCAAACAATCCAACGGGGCAAGCTGCAACATGGAAACAATTAGAGCAACTAGTGCAGTTTGCAAGTGACAATGGATCCATAATTGTCTTTGACTCTGCTTATGCTTCTTATGTTAGAGATGGTAGTCCGAGATCAATATTTCAAATTCCCGGTGCAAGAAAGGTTGCAATCGAGATTGCATCTTTCTCCAAATTTGCCGGGTTTACTGGCATACGTCTGGGTTGGACTGTGGTTCCGAATGAGCTGTTATTTTCCAATGGATTTCCTGTTATTAAAGATTTCAATCGCATTGTATGCACTTGCTTCAATGGAGCATCCAATATTGCTCAGGCAGGTGGACTGGCTTGTCTCACCCCCATGGGTCTGGAGGTGCTAAATCTTGGGATGTATTCAACGAAATTCTGGAGAAAACTCACATCATTTCAGTTCCAGGCTGCGGATTTGGCCCTGGAGGGGAAGGGTATTTACGATTCAGTGCTTTTGGTAAACGACACAAAGTCATTGAGGCCTCTAGAAGATTGA 1227 42.95 MVDLSFFLPKNSSDESSVTAAHAALKLRFAGWAVLISGLKAQMDNGGGRCTKVPRNANMEKLRNEYLFPEISRLELQHLEKYPHAEVISLGIGDTTEPLPDVIASSMADYALALSTSKGYRGYGPEQGNKSLRKAIAETFYKDIPVEDTEVFVSDGSQCDITRLQLLLGSNVTIAVQDPSFPAYIDSSVIIGQADDYEDKVGRYRNIKYMRCGPENNFFPNLSTAARADIIFFCSPNNPTGQAATWKQLEQLVQFASDNGSIIVFDSAYASYVRDGSPRSIFQIPGARKVAIEIASFSKFAGFTGIRLGWTVVPNELLFSNGFPVIKDFNRIVCTCFNGASNIAQAGGLACLTPMGLEVLNLGMYSTKFWRKLTSFQFQAADLALEGKGIYDSVLLVNDTKSLRPLED 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10486996 10492903 + BLOR05519 Blo13g00238 68633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00238 408 CDD AAT_like 88 354 - -
Blo13g00238 408 Gene3D - 96 352 IPR015421 GO:0003824
Blo13g00238 408 SUPERFAMILY PLP-dependent transferases 66 355 IPR015424 -
Blo13g00238 408 Gene3D Aspartate Aminotransferase, domain 1 81 355 IPR015422 GO:0003824
Blo13g00238 408 PANTHER AMINOTRANSFERASE 42 360 IPR019942 GO:0008483
Blo13g00238 408 Pfam Aminotransferase class I and II 86 324 IPR004839 GO:0009058|GO:0030170
Blo13g00238 408 PANTHER AMINOTRANSFERASE ALD1, CHLOROPLASTIC 42 360 - -
Blo13g00238 408 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 55 358 IPR019942 GO:0008483
Blo13g00238 408 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 296 309 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00238 K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] - fve:101304482 523.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00238 Blo-Chr13:10486996 Blo17g00208 Blo-Chr17:2096928 6.14E-143 dispersed
Blo13g00238 Blo-Chr13:10486996 Blo12g00675 Blo-Chr12:25039341 6.80E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g813 . . . . . . Bma05g00631 . . . . . . . . . . . . . . . . . Cla10g00945 Cam10g0968 Cec10g1002 Cco10g0963 Clacu10g0990 Cmu10g1773 Cre10g1147 Cone12ag1018 Cone8ag1048 . . . . . . . Blo13g00238 . . . Bpe05g00455 . . . Cmo04g00449 . . . . . Cpe14g00243 Cpe01g00377 Bhi11g01087 . . . Hepe07g0382 Mch10g0394 . . . . . . . . Lsi03g00994 . . Cme07g02224
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010966 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31