Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00257 ATGGAGAGAAATACCACTGTACATATTATTACTGTTGAAGCTTGCAAGTTGACATTAATTTTATTGGTATTTATTTCTTTAATTTTGATCAGTGGTTCACTTTTTCTTTTCGATCGAAAAGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGGAAGAAGAAAGATGGCAAGACCGTGAAGGAAGCTCACGAGAAGCTGAAGGTTGGAAGCATTGATGTATTACACTGTTATTATGCCCATGGAGAAGAAAATGAAAACTTTCAGCGACGCAGCTATTGGATGCTTGAAGAGGATTTAATGCACATTGTTTTCGTTCACTATCTGGAAGTTAAGATCATATCACCTCTTTCAACTGTAGTTGAAAATGACCTTGTCCCTGAGTTTTCGCTCAGAGAGGGTGAAAGAGATGGGGATAGGGGGGTTCATATCATTGGTATCAGAGCAATCCGTAAGCAGGAAAGCTGTTGTCAAGCTTGTTTAGAAGCGTTCAAGTTGTTGACAGTCACAAGTTTAATGGCTGGTAAGAGAAGAGAAGGAAAAGAAGCGGCTGAAGAAGGCAGAACCGGCCCAGTTCTTGAGGGATTCCAGTCGGAACTTGGGATTTTTCGCGATCAAGTTTCTCAAGATCTGGAAAAGTTGAAAGTCGACGTTGCTTCGCTCCAAACCATGAAGGCTGATCTGGCTTCGGTGATGGAGACTCTAGCTACGTTGTCGGCAACGTTGACGACGACACGCGACGAGGTTCGGACGGGGGTGAGGCGCGACGATGTCCGCGTAGGGTTGGAGCGCGACAAGGGAACCAGAACTAATGTTGGAGCGCCAAGAGAGACTGATGTTTCAAGTTCAAGAAAGAGCAGCCCTACAAGTACTAGTTTATCAAAAAGTCATGCCAAATCACTTTCTGGTTATTTGGATTCCCCCAGCACAACTAGCTCTGTGACGTCTTTGTGTGAAGATGCTGATTCTGAGGATGGCTACCAAGCAACTTCAAATTTTCATTCATTTCCGGAGTTGGCAATAGCACAAACCAGAAAATCTCCTCTCTTGGCTCAGACGGACATTGGCTTCCCAGATTTTTATGATCAGCGTCCAATCACTGGTAATCTTGTTTGCTTTTTTTCTATCACAGAGTATTCTCAACCTGCTGAGACAGATGGACTTCCAGATTTTGAAGAAAACTCTCCAGTGATTGATTCTCAAAAAACACTTGGTTCTGCCTCTTGGGAAGAGATCTTACAACAGTGTACGAGTGGATCCGACTCTGTACGATCTGCTGTTTCAACATCTACAACGAAGCCTATTACATCAAGGATTGTTCATGGGCAAGAAAATATGAATTCAAGCATTAATTTCTCAGTGGATAGTACCATCCGAGAGGACCATGGAACTTCTATGGCAATTTCATCAAATTGGCAGATTCCTGTTGGAGACAATGCATTACCTTTTCCAAAAGAGCATGTGGACCAATTATCAGACCCTGAAACTGTTTATGATCTGGATGCATGTGTGTCATGGCACAGAAATCATGATGCAGGTTTTGAAAATTCTCAGAAGTTACATCTTTCTCAGCTTGAAATGTTAAATGAACAAAATATGTCGAGCAATCTTCTGTACCAACTAGCAAATGGAGAATCCCAGTGCTTGATGAAATTGAATTCTGAGAAAGACTTGATCCTGGATGGAAATGTTCACTATGCTTCAACTTTGCGACAATCACTCTTAGGAGGAGAAGAAGCTTTGAAAAAAGTTGACAGTTTTTCTCGCTGGATATCTAATGAATTGGGGGAGGTAGATGACTTGCGTATGCATCCATCGCCAGGAATTTCATGGAGTGCTGATGAATGTGGAAATATTCATGACGATTCCTCCTTGAGCCCCTCCCTCTCTCAAGACCAGCTTTTCAGCATAACTGACTATTCTCCAAAGTGGTCATTCACGGACTTGGAAACTGAGGTTCTGATTGTTGGACGATTTTTGGGGATTTACCAAGATGTTGCCAAATGTAATTGGTCATGTATGTTTGGGGAAGTAGAGGTTCCTGCCATGGTTTTGGCCAACGGAATTCTTTGTTGCCGTGCTCCACCCCATAGCACAGGACAAGTGCCTTTTTATGTAACTTTTTCAAACAGATTAGCTTGCAGTGAAGTGCGAGAATTTCAGTATATGGCTGGCTCTGTCAAGGATGTGGATGTCACAGATATCTATGATGATGGTACAAATGAATTACTTCTGCATTCGCAACTTGACAGCTTATTATCCCTGAATTATCTTGGATCTTCTAGCAATATCTTTATAGATAATTTGGACAAACGAAATGTAATTCGTAAACTTATTGCACTCAAGGAGGAAAAAGATTATATTGTTGAGACAAATTCTCAGGAAGAACCGATCCAGCTGGAGAATAAGAAATATTTCTTTAAAATCCTGATGAAAGAAATGTTGTACTCATGGCTTCTCCATAAAGTTGTTGAAGATGGAAAAGGACCTAATGTGTTGGATGAAAATGGGCGAGGGGTAATTCATTTGGCTGCGGCTCTTGGTTATGATTGGGCCATGAAACCAATTGTGAGTGCAGGAGTTAGTATAAATTTCCGTGACATCAATGGATGGACTGCACTTCACTGGGCAGCGTCCTGTGGCAGGCAAGAATTTAGAACTTTAACGGTTGCAGTTCTTATTTCTTTGGGCGGTGGCGCGGGTCTCTTGACAGATCCTTCTCCTGAATATCCTTTGGGAAAAACACCTGCAGACCTCGCATCTGCCAAAGGTCACAAAGGGATCTCTGGGTTTTTGGCAGAATCTTCATTGACTAGCCATCTCTCAACTTTAACAATGAATGATACCAAGCAAGACAGTGCAGAAGTTTCATCCACCAAAATTGTGCATAGTGTGTCTGAAAGAATTGCAACTCCTGCCAATGATGGTTATTTGCCTGGTGAACTGTCTCTAAAGGATTCACTCTCAGCTGTTAGTCATGCTACACAAGTCGCCGATCGAATACATCTAATGTTCAGGATGCAGTCGTTTCAGAGGAAACAATTTGCAGAACACGACATTGATCAATTTGAACTTTTAGATGATCGTACGCTTTCGATTATTGCTACCAGAGCACTAAAGGGTGGACAAGGCAACGGGCTTGCACATTCTGCCGCAATTCACATACAGAAAAAGTTTCGTGGTTGGAAAAAAAGAAAAGAGTTCTTGTTGATTCGTCAAAGAATAGTTAAAATACAGGCCCATGTCAGGGGACACCAGGTACGGAAGAAATACCCAGCAATGACCTGGTCAATTGGAATTGTAGATACTTTATTGCGTTGGAGACGGAAAGGAAGCAGTTTGCGGCCAATGGTGGTTCCTAAGGAACCTACCTCTGAAAGCAAGCCAGAAGAGGATGAGGATGATTTTTTGAAAAAAGGAAGGAAACAAACTGAGGAGAGGTTGCAAAAGGCACTTACTAGAGTTAAGTCTATGGCTCAGGATCCTCAGGGACGAGATCAGTACCGTAGGCTGCTAACTTTAGTTCATGGGATTCGTGAAAACAAGGTGTCTGGTATGGACATTACAGTTTCAGAGAATAGGGTTGATGAGGAACTGAATGAATTAGATGATATAATTGACGATGACACCTTAATGTCTATAACATTTGGTTGA 3657 41.95 MERNTTVHIITVEACKLTLILLVFISLILISGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEDLMHIVFVHYLEVKIISPLSTVVENDLVPEFSLREGERDGDRGVHIIGIRAIRKQESCCQACLEAFKLLTVTSLMAGKRREGKEAAEEGRTGPVLEGFQSELGIFRDQVSQDLEKLKVDVASLQTMKADLASVMETLATLSATLTTTRDEVRTGVRRDDVRVGLERDKGTRTNVGAPRETDVSSSRKSSPTSTSLSKSHAKSLSGYLDSPSTTSSVTSLCEDADSEDGYQATSNFHSFPELAIAQTRKSPLLAQTDIGFPDFYDQRPITGNLVCFFSITEYSQPAETDGLPDFEENSPVIDSQKTLGSASWEEILQQCTSGSDSVRSAVSTSTTKPITSRIVHGQENMNSSINFSVDSTIREDHGTSMAISSNWQIPVGDNALPFPKEHVDQLSDPETVYDLDACVSWHRNHDAGFENSQKLHLSQLEMLNEQNMSSNLLYQLANGESQCLMKLNSEKDLILDGNVHYASTLRQSLLGGEEALKKVDSFSRWISNELGEVDDLRMHPSPGISWSADECGNIHDDSSLSPSLSQDQLFSITDYSPKWSFTDLETEVLIVGRFLGIYQDVAKCNWSCMFGEVEVPAMVLANGILCCRAPPHSTGQVPFYVTFSNRLACSEVREFQYMAGSVKDVDVTDIYDDGTNELLLHSQLDSLLSLNYLGSSSNIFIDNLDKRNVIRKLIALKEEKDYIVETNSQEEPIQLENKKYFFKILMKEMLYSWLLHKVVEDGKGPNVLDENGRGVIHLAAALGYDWAMKPIVSAGVSINFRDINGWTALHWAASCGRQEFRTLTVAVLISLGGGAGLLTDPSPEYPLGKTPADLASAKGHKGISGFLAESSLTSHLSTLTMNDTKQDSAEVSSTKIVHSVSERIATPANDGYLPGELSLKDSLSAVSHATQVADRIHLMFRMQSFQRKQFAEHDIDQFELLDDRTLSIIATRALKGGQGNGLAHSAAIHIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKKYPAMTWSIGIVDTLLRWRRKGSSLRPMVVPKEPTSESKPEEDEDDFLKKGRKQTEERLQKALTRVKSMAQDPQGRDQYRRLLTLVHGIRENKVSGMDITVSENRVDEELNELDDIIDDDTLMSITFG 1218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11839242 11852483 + BLOR05538 Blo13g00257 68652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00257 1218 Pfam CG-1 domain 31 111 IPR005559 GO:0003677
Blo13g00257 1218 MobiDBLite consensus disorder prediction 1117 1143 - -
Blo13g00257 1218 Pfam IQ calmodulin-binding motif 1050 1069 IPR000048 GO:0005515
Blo13g00257 1218 Pfam IQ calmodulin-binding motif 1074 1092 IPR000048 GO:0005515
Blo13g00257 1218 Coils Coil 1142 1162 - -
Blo13g00257 1218 Pfam IPT/TIG domain 637 722 IPR002909 -
Blo13g00257 1218 ProSiteProfiles IQ motif profile. 1072 1096 IPR000048 GO:0005515
Blo13g00257 1218 MobiDBLite consensus disorder prediction 275 318 - -
Blo13g00257 1218 SMART CG_1_2 1 113 IPR005559 GO:0003677
Blo13g00257 1218 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 31 114 - -
Blo13g00257 1218 ProSiteProfiles IQ motif profile. 1049 1078 IPR000048 GO:0005515
Blo13g00257 1218 SMART iq_5 1048 1070 IPR000048 GO:0005515
Blo13g00257 1218 SMART iq_5 1071 1093 IPR000048 GO:0005515
Blo13g00257 1218 MobiDBLite consensus disorder prediction 1125 1143 - -
Blo13g00257 1218 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 267 1217 - -
Blo13g00257 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1098 IPR027417 -
Blo13g00257 1218 SUPERFAMILY Ankyrin repeat 738 935 IPR036770 -
Blo13g00257 1218 MobiDBLite consensus disorder prediction 259 318 - -
Blo13g00257 1218 Gene3D - 814 979 IPR036770 -
Blo13g00257 1218 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 31 114 - -
Blo13g00257 1218 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 267 1217 - -
Blo13g00257 1218 Gene3D Immunoglobulins 631 727 IPR013783 -
Blo13g00257 1218 MobiDBLite consensus disorder prediction 259 273 - -
Blo13g00257 1218 ProSiteProfiles Ankyrin repeat profile. 870 906 IPR002110 GO:0005515
Blo13g00257 1218 ProSiteProfiles CG-1 DNA-binding domain profile. 3 118 IPR005559 GO:0003677
Blo13g00257 1218 Coils Coil 205 225 - -
Blo13g00257 1218 Gene3D - 1049 1097 - -
Blo13g00257 1218 SUPERFAMILY E set domains 638 723 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00257 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 970.304
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00054 Blo-Chr1:683203 Blo13g00257 Blo-Chr13:11839242 4.73E-29 dispersed
Blo12g00279 Blo-Chr12:16649107 Blo13g00257 Blo-Chr13:11839242 9.52E-11 dispersed
Blo13g00257 Blo-Chr13:11839242 Blo16g00702 Blo-Chr16:26951610 1.77E-60 dispersed
Blo13g00257 Blo-Chr13:11839242 Blo01g00165 Blo-Chr1:2203598 4.60E-109 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00257 . 579 1213 CAMTA Transcription Factor Family AT5G09410 55.9 5.0e-172 602.1
Blo01g00054 . 111 998 CAMTA Transcription Factor Family AT3G16940 53.0 7.4e-255 877.1
Blo01g00054 . 90 715 CAMTA Transcription Factor Family AT4G16150 54.7 1.1e-201 700.7
Blo13g00257 . 579 1213 CAMTA Transcription Factor Family AT5G09410 55.9 5.0e-172 602.1
Blo01g00054 . 90 715 CAMTA Transcription Factor Family AT4G16150 54.7 1.1e-201 700.7
Blo01g00054 . 111 998 CAMTA Transcription Factor Family AT3G16940 53.0 7.4e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13126 PF01833 TIG 7.20E-06 CL0159 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00257 Blo_Chr13 FPKM 34.181992 32.259434 100.406113 99.763092 11.592032 14.134557 10.618582 42.879608 44.466637 39.422558