Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00264 ATGAAATCGCCTGCTGGTCGCCAGTGGAAGGAGTCGATGCGGGTTCGTCCGAGTATGATTAAGGTTTCGTTCAGAGAGAAACCTTCAAACGTCTGGAACAGTTCGGCCGATGCACTAATTTTGCCTAAAGATCTTGAGCTTGATTTCAGATCATATGGAGTATACAATATTAACGAGTTTGGATTGCAAAAGTGCTCCTCTTGGCCTGTGGATGATACTGATTATAGTGAAAAGACATACCGATGTGCTTCACATGAGATGAGAATATTTGGAGCAATTGGTAGTGGTGCTAGTAGTGTTGTGCAGAGAGCTATCCATATTCCCAGTCATAGAATTTTGGCTCTGAAAAAGATTAATATTTTTGAAAAGGACAAAAGGCAACAGCTTCTTACAGAGATAAGGACACTATGTGAAGCGCCATGTTACCAGGGTCTTGTAGAATTCAATGGAGCGTTTTTTACTCCTGACTCAGGACAAATCAGTATAGCTTTGGAGTACATGGATGGAGGCTCGTTGGCGGATATATTACGTATGAAAAAGAAAATACCAGAGCCTGTTCTTTCTTCAATGTTCCAAAAGATTCTGCAGGGACTGGGGTATTTGCATGGAGTTAGATATTTAGTCCACCGTGATATAAAGCCAGCTAATTTGCTCATAAATCTTAAGGGTGAGCCAAAAATAACAGATTTTGGTATAAGTGCGGGATTAGAGAATTCAATGGCGATGTGTGCTACTTTTGTTGGGACTGTTACGTACATGTCACCTGAACGGATTCGAAATGAAAATTACTCCTATCCTGCTGACATCTGGAGCCTTGGACTTGCTCTCTTTGAGTGTGGTACTGGAGAATTCCCATATACTGCTACTGAAGGTCCAGTAAATCTCATGCTGCAGATTTTGGATGACCCGTCACCATCACCACCAAAACACAGCTTTTCACCGGAGTTTTGCTCGTTTGTTGATTCTTGCTTGCAAAAGGATGCAGAGGCAAGGCCCACAGCCGATCAGTTGCTTGCACATCCATTTATCACAAAGTATGAGGATGCTCAAGTAGACTTGGCAGATTTTATAAGAAGTGTGTTTGACCCGACACAGAGGTTGAAGGACTTGGCAGATATGCTGACAATTCATTATTACTTACTCTTTGATGGACCTGATGACCTTTGGCATCACACGCGAACCTTGTATGATGAACGTTCAAATTTCAGTTTCGCAGAGAAGCTTTATGTTGGCCAAAATGACATTTTCGAAACTGTGTCAAATATTCGAAGCACATTAGCAGGTGATTGGCCTCCTGAAAAACTAGTGCATGTTGTTGAAAAGCTCCAGTGTCGAGCTCATGGACCAGATGGCGTTGCTATTCGAGTATCCGGATCGTTTATCATCGGGAACCAGTTTCTAGTGTGTGGAGATGGAGTTCAAGTGGAGGGCTTACCCCATTTTAAAGATCTTGCTGTCGATCTTGGCTCTCGGAGAATGGGCATGTTCCGCGAGCAGTTTATTATGGAGCCGAGTAGTGTTATTGGTCGATATGTTATTTCGAAACAAGAGCTTTATGTAACCCATCAGTAA 1572 42.56 MKSPAGRQWKESMRVRPSMIKVSFREKPSNVWNSSADALILPKDLELDFRSYGVYNINEFGLQKCSSWPVDDTDYSEKTYRCASHEMRIFGAIGSGASSVVQRAIHIPSHRILALKKINIFEKDKRQQLLTEIRTLCEAPCYQGLVEFNGAFFTPDSGQISIALEYMDGGSLADILRMKKKIPEPVLSSMFQKILQGLGYLHGVRYLVHRDIKPANLLINLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNENYSYPADIWSLGLALFECGTGEFPYTATEGPVNLMLQILDDPSPSPPKHSFSPEFCSFVDSCLQKDAEARPTADQLLAHPFITKYEDAQVDLADFIRSVFDPTQRLKDLADMLTIHYYLLFDGPDDLWHHTRTLYDERSNFSFAEKLYVGQNDIFETVSNIRSTLAGDWPPEKLVHVVEKLQCRAHGPDGVAIRVSGSFIIGNQFLVCGDGVQVEGLPHFKDLAVDLGSRRMGMFREQFIMEPSSVIGRYVISKQELYVTHQ 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12400561 12406856 - BLOR05545 Blo13g00264 68659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00264 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Blo13g00264 523 SUPERFAMILY NTF2-like 368 465 IPR032710 -
Blo13g00264 523 Gene3D Phosphorylase Kinase; domain 1 67 168 - -
Blo13g00264 523 PANTHER - 44 521 - -
Blo13g00264 523 SUPERFAMILY Protein kinase-like (PK-like) 89 366 IPR011009 -
Blo13g00264 523 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 44 521 - -
Blo13g00264 523 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Blo13g00264 523 SMART serkin_6 87 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo13g00264 523 Gene3D Transferase(Phosphotransferase) domain 1 169 367 - -
Blo13g00264 523 ProSiteProfiles Protein kinase domain profile. 87 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo13g00264 523 ProSiteProfiles Nuclear transport factor 2 domain profile. 370 520 IPR018222 -
Blo13g00264 523 Pfam Protein kinase domain 91 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo13g00264 523 Gene3D - 368 521 - -
Blo13g00264 523 CDD PKc_MAPKK_plant_like 88 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00264 K20607 MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2] - csin:114272195 830.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00264 Blo-Chr13:12400561 Blo16g00976 Blo-Chr16:38023577 1.52E-58 dispersed
Blo13g00264 Blo-Chr13:12400561 Blo14g00559 Blo-Chr14:8397327 1.30E-70 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo14g00559 CCT 35 361 MAP Kinase Kinase Gene Family AT4G26070 68.8 6.2e-131 464.2
Blo16g00976 CCT 304 586 MAP Kinase Kinase Gene Family AT4G26070 63.4 6.7e-101 364.4
Blo01g00529 . 94 379 MAP Kinase Kinase Gene Family AT4G26070 58.8 1.6e-97 353.2
Blo14g00559 CCT 35 335 MAP Kinase Kinase Gene Family AT4G29810 71.8 1.1e-127 453.4
Blo16g00976 CCT 286 586 MAP Kinase Kinase Gene Family AT4G29810 62.4 1.6e-107 386.3
Blo01g00529 . 89 353 MAP Kinase Kinase Gene Family AT4G29810 61.9 6.5e-96 347.8
Blo13g00264 . 50 522 MAP Kinase Kinase Gene Family AT5G40440 77.6 2.3e-222 768.5
Blo01g00529 . 87 383 MAP Kinase Kinase Gene Family AT5G56580 83.8 3.9e-144 508.1
Blo14g00559 CCT 29 350 MAP Kinase Kinase Gene Family AT5G56580 59.4 5.7e-111 397.9
Blo16g00976 CCT 280 587 MAP Kinase Kinase Gene Family AT5G56580 57.4 5.2e-96 348.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84618 PF00069 Pkinase 2.00E-58 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00264 Blo_Chr13 FPKM 2.726804 3.439527 5.275289 5.099459 7.776083 7.793472 7.538081 6.83819 7.401753 9.035645