Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00277 ATGAAACTTCTGCTCAATTATAAGAAGGTCGACAATATTGAAATCAAAAAGGAATTTGACATCCCCACTGCCATTGAGAAAGAAATTGAAGATGCTGAAGTTGCTGATTGGAGACCAGATGTGGGATTCAAAGCTGAGCCACCGAAGGGTGGTTTTGCCATGAGACAATACATCCCTGAACTTATGCCATTGATTGTTGAAGCTTTGTTGGATGGGGCTGCCGTCACTAAACGCGAAGTTGCTGTGGCTACGCTTGGCCAAGTTGTGCAGAGTACTGGATATGTTATAACTCCTTATAATGAGTACCGTCAATTGCTTGGGTTGCTATTGAAATTGCTAAATGGTGAGCTCGCATGGTCTACCAGACGTGAAGTATTGAAGGTACTAGGAATTATGGGGGCTCTAGATCCTCATGTGCATAAAAGAAACCAAATAAGCTTACCTGGTTCACATGGAGATGCTATTCGTGCTGCTATTGATGCTGGACAACATATCCAGTCCGTGGACGAACTACCTGTAGATTTGTGGCCATCATTTGCAACATCTGAAGATTATTATTCCACGGTTGCTATCAATTCTCTTATGCGAATACTTAGAGATCCTTCTATGGCTAGTTATCATCAAAAGGTGGTTGGATCTCTCATGTTTATATTTAAGTCGATGGGCCTTGGATCTGTTCCGTACCTACCAAAGGTTTTGCCTGATCTCTTTCACATTGTTGGTACTTGTGATGATACACTTAAAGATTTTATAACATGGAAGCTTGGAACCCTTGTTTCGATCGTGCGGCAGCATATTAGGAAATATTTGCCAGAGTTGAAATCTCTTATATCTGAATTATGGTCATCGTTTATTTTTCCATCTAGTAGCCGCCCCGCACTTGGCTACCCTGTTCTGCATTTGGTGGAGCAGCTTTGTTTGGCTCTCAATGATGAGTTCAGAATGATTCTTCCTGTTATTCTTCCTTGTTGCATTCAAGTACTAAGTGATGCAGAAAGGTGTAATGATTACACTTATGTGCTTGAGATCCTCCATGCTCTCGAAGTTTTTGGTGGTTAG 1059 41.55 MKLLLNYKKVDNIEIKKEFDIPTAIEKEIEDAEVADWRPDVGFKAEPPKGGFAMRQYIPELMPLIVEALLDGAAVTKREVAVATLGQVVQSTGYVITPYNEYRQLLGLLLKLLNGELAWSTRREVLKVLGIMGALDPHVHKRNQISLPGSHGDAIRAAIDAGQHIQSVDELPVDLWPSFATSEDYYSTVAINSLMRILRDPSMASYHQKVVGSLMFIFKSMGLGSVPYLPKVLPDLFHIVGTCDDTLKDFITWKLGTLVSIVRQHIRKYLPELKSLISELWSSFIFPSSSRPALGYPVLHLVEQLCLALNDEFRMILPVILPCCIQVLSDAERCNDYTYVLEILHALEVFGG 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14245215 14253794 + BLOR05558 Blo13g00277 68672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00277 352 Gene3D - 173 348 IPR011989 -
Blo13g00277 352 Gene3D - 48 141 IPR011989 -
Blo13g00277 352 SMART DUF3385_3 95 263 IPR024585 -
Blo13g00277 352 PANTHER ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 50 352 - -
Blo13g00277 352 Pfam Domain of unknown function (DUF3385) 95 263 IPR024585 -
Blo13g00277 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TOR 50 352 IPR026683 GO:0004674
Blo13g00277 352 SUPERFAMILY ARM repeat 54 331 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00277 K07203 MTOR, FRAP, TOR; serine/threonine-protein kinase mTOR [EC:2.7.11.1] - csv:101212051 550.051
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00067 Blo13g00277 CCT
Blo03g00067 Blo13g00277 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00277 Blo-Chr13:14245215 Blo03g01549 Blo-Chr3:43144185 3.81E-06 dispersed
Blo13g00277 Blo-Chr13:14245215 Blo03g00659 Blo-Chr3:28020259 6.76E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g724 . Blo03g00067 Bda06g01186 . Bpe07g00283 Bpe12g00735 . Bma12g00289 . . . . . . . . . . . . . . . . Cla10g00973 Cam10g0996 Cec10g1026 Cco10g0989 Clacu10g1017 Cmu10g1801 Cre10g1174 . Cone8ag1072 . . . . . . . Blo13g00277 . . . . . . Sed07g1254 Cmo04g00471 . . . . . . Cpe01g00394 Bhi11g01123 Tan01g0619 Cmetu07g1368 . Hepe07g0404 Mch10g0417 . . . . . . . . Lsi03g01012 . . Cme07g02201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006863 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00277 Blo_Chr13 FPKM 1.116465 1.399089 1.808808 1.651507 4.612899 4.765169 5.355558 1.453189 1.817517 1.871217