Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00300 ATGTATGTATACTGGTGTCCATTTTCATGTAAAATGTCATTCCGAAGCATTGTCCAGGATGTAAGAGATTGTGCAGGGAGTTTATCTAGACGGAGGTTTGAGGTCAGGCTGACTTCTCATGGAAGAGGAAAGTCACACGGGTCATTGCATGATTTTGATAATCAGCAGAATGTGGTTCAGAGCAGTTGTTGGGCGACCCTACCACCTGAACTTCTGTACGAAGTCATTCGCAGACTGGAAGAGAGTGAAAGCACTTGGCCTTCTCGAAAACATGTTGTGGCCTGTGCTGCAGTGTGCCATTCTTGGAGGGTGATGTGCAAAGAAATTGTTAAAAGTCCAGAGTTTTGTGGGAAGCTTACATTTCCCATCTCCCTGAAGCAGCCAGGGCCACGAGTCGGAAGCATTCAGTGCTTTATTAGAAGGGATAAATCTAATCTAACATACCACCTCTTTCTGTGCCTTAGCCCTGGCAAGTCCTTATTAGTTGAAAACGGAAAGTTTCTCCTCTCGGCTAAACGAATTCGAAAAACTACGAACACAGAGTACATAATCTCTACAAATGCTGATAACATTTCAAGATCAAGCAACACTTTCATTGGGAAGCTGAGGTCAAATTTTCTCGGGACGAAATTCATCATATACGACACACAGCCTCCATATGCTTTGGCTCCCCTCCCTCCTCCCGGGAGAACAAGCAGAAGGTTCTATACCAAAAAGGTGTCTCCAAAAGTCCCAAGCGCCCACTATGACATAGCCCATATAGCTTACGAACTAAATGTGCTAGGCACACGTGGCCCTCGGAGAATGCACTGTGTGATGGATTCGGTTCCCGCCTCAGCTCTTATTATAGGAAATACAGTTCCTGGCCAACCAGAGCTCATCACACGATGCCTTGAAGACTCGTTCCGAACTATGTCATTCTCCAAATCTGTTCATCACTCAACTGAATTCAGTAGTGCCAGATTTTCTGAATACAGAAGAATTGGTAGCGATGATGAGAATGTTGAATCAAGACCCTTGGTTCTTAAAAATAAGCCCCCAAGATGGCATGAACAATTGCAATGCTGGTGCCTGAATTTCCGAGGGCGAGTGACTGTGGCATCTGTCAAGAACTTTCAGCTGATTGCCGCTGCACAGCCAGCTGGGGCAGCAACGCCGTCTCAGCCAACTCCGCCTGAGCATGACAAGATAATTCTGCAGTTTGGTAAGGTGGGTAAAGACATGTTCACCATGGATTACTGCTATCCGCTTTCGGCTTTTCAGGCATTTGCGATCTGCTTGAGCAGCTTCGACACAAAATTGGCTTGTGAATATGGGAGTTACTGCAGAGCCAACGTTAGCTATGTGCAGAGGCTTACCACTTGCAGTGACAACGTGTGCAGAGCCGTGGTAAGGGGTGGAGTCTGTCAAGGCAGAGGGGGACAGAGTGAAATGGTGGTTGCGCCGCAGTCCAAAAGCCAGGAGGATGAGGAAATGGAGGAAGGGAAGGGGCAGAGGGAGAGGAAGGAGGGGCTGTGCTGGAAGAGGCCATTTTTTGGCTCTGATACCAAGTTGAGAAATGTAGAATTTGCTAGAGAGAAAGGAAGAAAGTGGAGACCGAGAAGTCACAGAATAGGAGGACCTTACCTCATCCAGTCGCCGATGGTTTATCACTATCGGAATTGCTCCCGGAGGCTCGGCCTCTCCCCGAAGCCCTCACCTGAAAGAAACCCATCGCCTGAAGCCGTCCCTTGCACCAGGCGCAATAGGAATCGCAGCATTGCGAGTTCTGCACGCACCCACGGTCGTGCCCCATCGAAGCCATCTCGTAACACGCCCTGCCCATCACCTCGTTGCCCGCTTCTCGCCAAACAGCGCTTCGTCTTCGTGAAGAAGCTTCGGCCGCGAAGGAGAATCGCAAGACCGCATATGGCCTCACCCCTCTCCCTCTTTTGTATTCTGCTTCTAGTTTTACCCCTTCTCCTTCATTAA 1971 48.81 MYVYWCPFSCKMSFRSIVQDVRDCAGSLSRRRFEVRLTSHGRGKSHGSLHDFDNQQNVVQSSCWATLPPELLYEVIRRLEESESTWPSRKHVVACAAVCHSWRVMCKEIVKSPEFCGKLTFPISLKQPGPRVGSIQCFIRRDKSNLTYHLFLCLSPGKSLLVENGKFLLSAKRIRKTTNTEYIISTNADNISRSSNTFIGKLRSNFLGTKFIIYDTQPPYALAPLPPPGRTSRRFYTKKVSPKVPSAHYDIAHIAYELNVLGTRGPRRMHCVMDSVPASALIIGNTVPGQPELITRCLEDSFRTMSFSKSVHHSTEFSSARFSEYRRIGSDDENVESRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAGAATPSQPTPPEHDKIILQFGKVGKDMFTMDYCYPLSAFQAFAICLSSFDTKLACEYGSYCRANVSYVQRLTTCSDNVCRAVVRGGVCQGRGGQSEMVVAPQSKSQEDEEMEEGKGQRERKEGLCWKRPFFGSDTKLRNVEFAREKGRKWRPRSHRIGGPYLIQSPMVYHYRNCSRRLGLSPKPSPERNPSPEAVPCTRRNRNRSIASSARTHGRAPSKPSRNTPCPSPRCPLLAKQRFVFVKKLRPRRRIARPHMASPLSLFCILLLVLPLLLH 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15994859 16003136 - BLOR05581 Blo13g00300 68695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00300 656 MobiDBLite consensus disorder prediction 484 501 - -
Blo13g00300 656 MobiDBLite consensus disorder prediction 560 611 - -
Blo13g00300 656 Pfam Tub family 125 432 IPR000007 -
Blo13g00300 656 PRINTS Tubby superfamily signature 248 275 IPR000007 -
Blo13g00300 656 PRINTS Tubby superfamily signature 394 413 IPR000007 -
Blo13g00300 656 PRINTS Tubby superfamily signature 415 437 IPR000007 -
Blo13g00300 656 PRINTS Tubby superfamily signature 360 376 IPR000007 -
Blo13g00300 656 PRINTS Tubby superfamily signature 342 359 IPR000007 -
Blo13g00300 656 PRINTS Tubby superfamily signature 198 222 IPR000007 -
Blo13g00300 656 PRINTS Tubby superfamily signature 182 198 IPR000007 -
Blo13g00300 656 SUPERFAMILY Tubby C-terminal domain-like 113 437 IPR025659 -
Blo13g00300 656 SUPERFAMILY F-box domain 57 108 IPR036047 GO:0005515
Blo13g00300 656 Pfam F-box domain 64 110 IPR001810 GO:0005515
Blo13g00300 656 ProSitePatterns Tub family signature 2. 422 437 IPR018066 -
Blo13g00300 656 ProSitePatterns Tub family signature 1. 360 373 IPR018066 -
Blo13g00300 656 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 12 437 - -
Blo13g00300 656 Gene3D Tubby Protein; Chain A 124 431 IPR025659 -
Blo13g00300 656 MobiDBLite consensus disorder prediction 475 501 - -
Blo13g00300 656 PANTHER TUBBY-RELATED 12 437 - -
Blo13g00300 656 MobiDBLite consensus disorder prediction 577 602 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00300 Blo-Chr13:15994859 Blo15g00775 Blo-Chr15:26557088 0 dispersed
Blo13g00300 Blo-Chr13:15994859 Blo02g00865 Blo-Chr2:33067374 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13128 PF01167 Tub 2.80E-110 CL0395 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00300 K19600 - jre:109007061 687.182