Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00343 ATGGGGATGAAGAGCGCTGTAGGAGAGATTGTTGAAGTCGATGGTGGTCATATCGTCCGTTCCACTGGCCGGAAAGACCGACACAGCAAGGTCTACACAGCGAAAGGCCCTCGCGACCGTCGTGTCCGCCTTTCAGCCCACACCGCAATTCAGTTCTACGACGTTCAAGATCGCTTAGGCTACGATCGACCCAGCAAAGCAGTCGATTGGCTTATAAAAAAGGCCAAGTCCGCTATTGACAAGCTGGCAGAGTTACCGCCTTGCTATGCCACCATCGCTGCAGATGCCGACACGAATAATGGCGGTAACGAGATGGTAATTTCTGCAGATCAATCGGAGTCATCCGGATACAATTTCCACCTCCAAAGGCATTTGGCTGAGAATCCAGAAAATAATAATTCGGGTTTCGTTCCTCCTCCGCTGTCTTCAGTTGCCCTAACAGACAGTATGAAAACCTTCTTTCCCACAAGCTCTGGGACGGCCCCCATCAATTTCCAGACCTTCCCACCTGATATACTTTCAAGAACCGCAAACCCCACTCAAGATCTTGGCCTTTCTCTCCATTCTTTTCAAGATCCTGGCTTGATTCACTCTCAGGGAGAGCCAAACCACTCGCCACAGACCGATCAAAACCTTTTCTCCGGCTCGCATCAGGTAGGGTATGAACCAAATTACCAGATAATGGCAGCTTGGGCAAACGATAGAGGCGCAGAACATGGAAGTGGGTTTGTTTTCAGCTCGCTGCCAATTTTTAGCCAGGGCGGCTCTGCTGCAGTCTCACAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCTGTGTCATTTCGCGGTTGGAACGATCTTTCAATTGCTGTATCCAAAGACCAGAAGACTCATTCACTTCACCAATCTTCGTTATTTGGTACTCGTTTCGTTGCTGATGGACAGATTCCGGCCGACGATGACAGCGGTATGGTTTCAGAAAGATTGTCGTCTTCTTCTATGAACTCCCACCATCAAGTCGGCCACAACTGA 1014 49.8 MGMKSAVGEIVEVDGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPCYATIAADADTNNGGNEMVISADQSESSGYNFHLQRHLAENPENNNSGFVPPPLSSVALTDSMKTFFPTSSGTAPINFQTFPPDILSRTANPTQDLGLSLHSFQDPGLIHSQGEPNHSPQTDQNLFSGSHQVGYEPNYQIMAAWANDRGAEHGSGFVFSSLPIFSQGGSAAVSQRGPLQSSYSPSVSFRGWNDLSIAVSKDQKTHSLHQSSLFGTRFVADGQIPADDDSGMVSERLSSSSMNSHHQVGHN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 19861562 19862575 - BLOR05624 Blo13g00343 68738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00343 337 Pfam TCP family transcription factor 23 113 IPR017887 -
Blo13g00343 337 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 332 IPR005333 GO:0003700
Blo13g00343 337 MobiDBLite consensus disorder prediction 311 337 - -
Blo13g00343 337 PANTHER TRANSCRIPTION FACTOR TCP4 2 332 - -
Blo13g00343 337 MobiDBLite consensus disorder prediction 319 337 - -
Blo13g00343 337 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00343 - - - gmx:100796390 387.111
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00343 Blo-Chr13:19861562 Blo14g00746 Blo-Chr14:21001018 1.79E-25 dispersed
Blo13g00343 Blo-Chr13:19861562 Blo13g00346 Blo-Chr13:20322285 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g203 . . . . Bpe12g00269 . . Bma08g00546 . . Cma02g00071 . Car02g00060 . . . . . . . . . . . . . . . . . . . . . . Lsi10g01578 . . . . Blo13g00343 . Bda15g00925 . . . Bma12g00712 Sed01g0139 Cmo02g00070 . . . . . . Cpe05g01523 Bhi10g01073 Tan05g0714 Cmetu11g1077 . Hepe08g0578 . . . . . . . . . Lsi11g01684 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00426 . 35 259 TCP Transcription Factor Family AT5G23280 51.7 2.3e-50 196.1
Blo04g00768 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 81.7 5.6e-40 162.5
Blo10g00401 . 1 284 TCP Transcription Factor Family AT3G27010 53.0 5.0e-66 248.4
Blo11g00611 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 3.8e-58 222.2
Blo17g00570 . 1 272 TCP Transcription Factor Family AT3G27010 50.2 1.1e-57 220.7
Blo04g00426 . 8 259 TCP Transcription Factor Family AT5G08330 51.8 4.9e-58 221.5
Blo06g01211 . 26 126 TCP Transcription Factor Family AT5G60970 76.5 1.3e-38 157.5
Blo13g00343 . 8 191 TCP Transcription Factor Family AT2G31070 53.8 8.3e-41 164.9
Blo13g00346 . 8 191 TCP Transcription Factor Family AT2G31070 53.3 1.1e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13132 PF03634 TCP 1.00E-31 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00343 Blo_Chr13 FPKM 9.315789 10.858444 13.430202 12.9124 20.446026 22.728016 20.022024 12.862011 14.503939 14.488782