Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00346 ATGGGGATGAAGAGCGCTGTAGGAGAGATTGTTGAAGTCGATGGTGGTCATATCGTCCGTTCCACTGGCCGGAAAGACCGACACAGCAAGGTCTACACAGCGAAAGGCCCTCGCGACCGTCGTGTCCGCCTTTCAGCCCACACCGCAATTCAGTTCTACGACGTTCAAGATCGCTTAGGCTACGATCGACCCAGCAAAGCAGTCGATTGGCTTATAAAAAAGGCCAAGTCCGCTATTGACAAGCTCGCAGAGTTACCGCCTTGCTATGCCACCATCGCTGCAGATGCCGACACGAATAATGGCGGTAACGAGATGGTAATTTCTGCAGATCAATCGGAGTCATCTGGATACAATTTCCACCTCCAAAGGCATTTGGCTGAGAATCCAGAAAATAATAATCCGGGTTTCATTTCTCCTCCGCTGTCTTCAGTTGCCCTAACAGACAGTATGAAAACCTTCTTTCCCACAAGCTCTGGGACGGCCCCCATCAATTTCCAGACCTTCCCACCTGATATACTTTCAAGAACCGCAAACCCCACTCAAGATCTTGGCCTTTCTCTCCATTCTTTTCAAGATCCTGGCTTGATTCACTCTCAGGGCGAGCCAAACCACTCGCCGCAGACCGATCAAAACCTTTTCTCCGGCTCGCATCAGGTAGTTTATGAACCAAATTACCAGGTAACGGCAGCTTGGGGAAACGATAGAAGCGCAGAACATGGAAGTGGGTTTGTTTTCAGCTCGCTGCCACTTTTTGGCCAGTGTAGCTCAGCTGCATTCTCACAAAGGGGACCCCTTCAGTCCAGTTACTCACCTTCTGTGTCATTTCGCGGTTGGAACGATCTTTCAATGGCTGTATCCAAAGACCAGAAGACTCATTCACTTCACCAATCTTCGTTATTTGGTACTCGTTTCGTTTCTGATGGGCTACATGGCTTTTGCATTCCCGGACAGATTCCGGCCGACGATGACAGCAGTATGGTTTCAGAAAGATTGTCGTCTTCTTCTATGAATTCCCACCATTAA 1023 49.07 MGMKSAVGEIVEVDGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELPPCYATIAADADTNNGGNEMVISADQSESSGYNFHLQRHLAENPENNNPGFISPPLSSVALTDSMKTFFPTSSGTAPINFQTFPPDILSRTANPTQDLGLSLHSFQDPGLIHSQGEPNHSPQTDQNLFSGSHQVVYEPNYQVTAAWGNDRSAEHGSGFVFSSLPLFGQCSSAAFSQRGPLQSSYSPSVSFRGWNDLSMAVSKDQKTHSLHQSSLFGTRFVSDGLHGFCIPGQIPADDDSSMVSERLSSSSMNSHH 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20322285 20323307 + BLOR05627 Blo13g00346 68741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00346 340 Pfam TCP family transcription factor 23 109 IPR017887 -
Blo13g00346 340 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Blo13g00346 340 PANTHER TRANSCRIPTION FACTOR TCP4 2 340 - -
Blo13g00346 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 340 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00346 - - - gmx:100796390 389.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00961 Blo-Chr7:28969838 Blo13g00346 Blo-Chr13:20322285 3.95E-74 dispersed
Blo10g00746 Blo-Chr10:23498369 Blo13g00346 Blo-Chr13:20322285 6.18E-68 dispersed
Blo13g00346 Blo-Chr13:20322285 Blo14g00746 Blo-Chr14:21001018 1.98E-25 dispersed
Blo13g00343 Blo-Chr13:19861562 Blo13g00346 Blo-Chr13:20322285 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00426 . 35 259 TCP Transcription Factor Family AT5G23280 51.7 2.3e-50 196.1
Blo04g00768 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 81.7 5.6e-40 162.5
Blo10g00401 . 1 284 TCP Transcription Factor Family AT3G27010 53.0 5.0e-66 248.4
Blo11g00611 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 3.8e-58 222.2
Blo17g00570 . 1 272 TCP Transcription Factor Family AT3G27010 50.2 1.1e-57 220.7
Blo04g00426 . 8 259 TCP Transcription Factor Family AT5G08330 51.8 4.9e-58 221.5
Blo06g01211 . 26 126 TCP Transcription Factor Family AT5G60970 76.5 1.3e-38 157.5
Blo13g00343 . 8 191 TCP Transcription Factor Family AT2G31070 53.8 8.3e-41 164.9
Blo13g00346 . 8 191 TCP Transcription Factor Family AT2G31070 53.3 1.1e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13133 PF03634 TCP 1.30E-31 No_clan Blo TF