Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00396 ATGAGAATCACTATTCTATCATGGGGTGGTCACGAATTCTCCATACAAGTGAGCCCCCAAGAACCAGTGGAAGAAATCAAAAGGAAGATAGAACAAGTCCTTGGACTTCCTTCAGAGTTTCAATCTTTATCACTTCATGGGTGGGAACTAATGGATGGGCTCGACATGGAGGACTATCCAATCATCACAGAAGGTACTAAAATCAACCTCAACAGCATCAATTACATTCCTCCTCCTTTCAACAATCAGCCTAGCAAGATTTTCATAGTGGTAAAATTTTTGGCTCGGCAAATTCAAATTGAGGTCGATATGTTTGAAACCGTCCGCACCCTAAAAGAAAAAATCCACATACTCTATGGTACACCTATAAGGAGAATGTCATTATTCTTTTCGGGGGTCGAATTGGAAGACGATTATCGCAATATTAGAGAATACGGTATAAGGGAATCGTCCGAAATCATCGTGTTTTTAAAGACGATAAATCAGCTTAACGACCAGCCGGCCACAAGACTGCTAAACATTACAGTGCGAACATTCTCGAGTTTGCTTAATGGAGCCACAATTCCTTTGGAAATTAAGGACTCAAGCAATGCAAAGGAGTTGAGGGAATTTCTTTTGACCAGAAAAATACTTCCTCTTGATGATTACTTGCTCATACACAAACAGAGAATTATGCGCGACGAATTTAGTCTTCGATGGCACGGGGTCGAAGATGGAGATATTCTTTATGAAAGTTTCATGTCTGAATTCGACACCCAGATTCCATCTACTTTTGATCCTTTTGCTGATGCCAATGCTGAGGATTCAGGAGCTGGTGCAAAAGAGTACGTTCATGTGCGTATACAGCAGCGGAATGGAAGAAAAAGCCTGACAACTGTGCAAGGTTTGAAGAAAGAATACAGCTACAACAAGATACTTAAAGACCTCAAGAGGGAATTTTGCTGTAATGGTACTGTTGTTCAGGACCCAGAGCTAGGACAGGTGATACAACTTCAAGGCGATCAAAGAAAGAATGTTTCAGCATTTCTCGTGCAGCTCTCGCCCAACTACGAGATCATGGGGATTGGGGTTGGACAGGTGGTTGAGTCGAATGATTTTGATTTCGGGTCGGTTTTGCTGTGTGCTGGTCATCTGTTTCAACCAGTTTTCACTATTCATCACAGAACCGATTTGAACTACTTGGTTCATCAACAGTTCAGATCCAATTTTTCATCGATCTCAACTCTCATGGCTGACTTCGATCACTCCTCTGATGCTACTTTCGTTGATTCTCCAGAGGGAAGTAGTCAAGATTTCAAGCTTGAATTTTCAGAAGATGAAGAATTTCTGATCATAAGGATGTTTAATCTGGTGGTCTTTGATTGCTGGAAGAATCCCAGGAAGGACAGCAGAGGAGATCGAGAAGTACTGGACTTCCAGACATTCCACGAGCGAATGAAAATGGGTGGAATTTGA 1455 41.79 MRITILSWGGHEFSIQVSPQEPVEEIKRKIEQVLGLPSEFQSLSLHGWELMDGLDMEDYPIITEGTKINLNSINYIPPPFNNQPSKIFIVVKFLARQIQIEVDMFETVRTLKEKIHILYGTPIRRMSLFFSGVELEDDYRNIREYGIRESSEIIVFLKTINQLNDQPATRLLNITVRTFSSLLNGATIPLEIKDSSNAKELREFLLTRKILPLDDYLLIHKQRIMRDEFSLRWHGVEDGDILYESFMSEFDTQIPSTFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKREFCCNGTVVQDPELGQVIQLQGDQRKNVSAFLVQLSPNYEIMGIGVGQVVESNDFDFGSVLLCAGHLFQPVFTIHHRTDLNYLVHQQFRSNFSSISTLMADFDHSSDATFVDSPEGSSQDFKLEFSEDEEFLIIRMFNLVVFDCWKNPRKDSRGDREVLDFQTFHERMKMGGI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23314273 23319473 + BLOR05677 Blo13g00396 68791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00396 484 CDD Ubl_ubiquitin_like 3 70 - -
Blo13g00396 484 ProSiteProfiles Ubiquitin domain profile. 1 61 IPR000626 GO:0005515
Blo13g00396 484 SUPERFAMILY eIF1-like 247 348 IPR036877 GO:0003743|GO:0006413
Blo13g00396 484 SUPERFAMILY Ubiquitin-like 1 63 IPR029071 -
Blo13g00396 484 Gene3D - 1 70 - -
Blo13g00396 484 Pfam Translation initiation factor SUI1 274 345 IPR001950 GO:0003743|GO:0006413
Blo13g00396 484 Gene3D - 173 243 - -
Blo13g00396 484 SMART ubq_7 1 73 IPR000626 GO:0005515
Blo13g00396 484 SMART ubq_7 87 158 IPR000626 GO:0005515
Blo13g00396 484 SMART ubq_7 172 249 IPR000626 GO:0005515
Blo13g00396 484 CDD Ubl_ubiquitin_like 89 156 - -
Blo13g00396 484 ProSiteProfiles Translation initiation factor SUI1 family profile. 277 347 IPR001950 GO:0003743|GO:0006413
Blo13g00396 484 SUPERFAMILY Ubiquitin-like 167 243 IPR029071 -
Blo13g00396 484 Gene3D - 244 354 - -
Blo13g00396 484 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 253 345 IPR005874 GO:0003743
Blo13g00396 484 Gene3D - 86 158 - -
Blo13g00396 484 Pfam Ubiquitin family 90 159 IPR000626 GO:0005515
Blo13g00396 484 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Blo13g00396 484 CDD eIF1_SUI1 275 345 IPR005874 GO:0003743
Blo13g00396 484 ProSiteProfiles Ubiquitin domain profile. 172 243 IPR000626 GO:0005515
Blo13g00396 484 ProSiteProfiles Ubiquitin domain profile. 87 158 IPR000626 GO:0005515
Blo13g00396 484 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 243 - -
Blo13g00396 484 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 243 - -
Blo13g00396 484 SUPERFAMILY Ubiquitin-like 78 167 IPR029071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01452 Blo-Chr3:41149327 Blo13g00396 Blo-Chr13:23314273 9.14E-46 dispersed
Blo10g00809 Blo-Chr10:25494621 Blo13g00396 Blo-Chr13:23314273 6.25E-55 dispersed
Blo13g00396 Blo-Chr13:23314273 Blo01g00985 Blo-Chr1:26941991 4.39E-09 dispersed
Blo02g00301 Blo-Chr2:3051519 Blo13g00396 Blo-Chr13:23314273 2.60E-27 transposed
Blo13g00396 Blo-Chr13:23314273 Blo02g00111 Blo-Chr2:804880 7.58E-06 wgd
Blo13g00396 Blo-Chr13:23314273 Blo07g00918 Blo-Chr7:28184347 8.05E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00396 - - pvy:116112507 324.709