Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00439 ATGCGGCGACCTCTGCAAATCACCGCCGGCGCTCTTGCCATCCCCTTCTTCGTTTTGCTCTTATCTTCCACCACCGACGCTCACAACATCACTCGCATTCTCGCTAAATACCCTGAGTTTTCCACCTACAACCACTACCTCACCATCACTCACCTAGCTGCCGACATTAACCGCCGCCTTACCATCACCGTCCTCGCCGTCGATAATGACGGAATGTCTACTTTACTTTCTAAAAATCTTTCTCTTTACACCGTCAGAAATGTCCTCTCCCTGCATGTCCTCGCCGATTACTTCGGCTCTAAAAAGCTCCATGAAATAACAGATGGAAGCACCTTGACCTCCTCCATGTTTCAAGCTAGTGGCTCCGCCTCTGGAACCTCTGGATATGTCAACATTACCGACTTGAAAGGCGGTAAAGTTGGGTTCGGAGCTGAAGATAACGACGGTCATCTCAATTCTTTCTATGTCAAGTCCATAGATGAAATTCCGTACAACATCTCGGTTATACAAATCAGTCAGTTGTTGACTTCGACTGAAGCTGAAGCGCCAACTCCCGACCCGGGAGACCTCAATCTGACAGTGATCGCTGCAAAACAAGGCTGCAAAGCTTTCTCCGACTTGTTAATAGCTACCGGAGCCGACACTACTTTTCAGTCGAACCTCGACGGAGGATTGACGGTGTTTTGCCCCACCGACGCCGTCATTAAGAGTTTCATGCCGAGTTACAGAAACCTAACGGCGGCTCAGAAAGTATCGTTGCTGCTATTTCACGGAATTCCGATTTACCTGCCCATGCAAACGCTCAAGTCCAGCAACGGACCTATGAACACCTTAGCGACAGACGGATCAAATAAATACGACTTCACCGTCCAAAACGACGGAGATGACGTGACGTTGAAGACAAAGGTTGCGACGGGGATGGTAACAGGGACATTGATAGATCAAGAGCCTTTAGTGATTTACAAGATCAACAAGGTCTTGATGCCCACAGAGCTTTTCAAGGCCGATCCGACCGAGGCACAATCCCCAAAAGCCCATAAGGTGGCTGCGGCCGATTCTCCTGATTCGTCCGATTCGCCGGATGGTGAGCCGTCGGATCAGAAGGCTGACGATGACAACGAGAGCAGTAAACAGTATGGTATCCGATCGATTGGCGTTATTTTGAGCTTGAGTGTGGGAGCCATGCTGCTTTGA 1194 49.5 MRRPLQITAGALAIPFFVLLLSSTTDAHNITRILAKYPEFSTYNHYLTITHLAADINRRLTITVLAVDNDGMSTLLSKNLSLYTVRNVLSLHVLADYFGSKKLHEITDGSTLTSSMFQASGSASGTSGYVNITDLKGGKVGFGAEDNDGHLNSFYVKSIDEIPYNISVIQISQLLTSTEAEAPTPDPGDLNLTVIAAKQGCKAFSDLLIATGADTTFQSNLDGGLTVFCPTDAVIKSFMPSYRNLTAAQKVSLLLFHGIPIYLPMQTLKSSNGPMNTLATDGSNKYDFTVQNDGDDVTLKTKVATGMVTGTLIDQEPLVIYKINKVLMPTELFKADPTEAQSPKAHKVAAADSPDSSDSPDGEPSDQKADDDNESSKQYGIRSIGVILSLSVGAMLL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24639403 24640697 + BLOR05720 Blo13g00439 68834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00439 397 Pfam Fasciclin domain 201 329 IPR000782 -
Blo13g00439 397 SUPERFAMILY FAS1 domain 194 329 IPR036378 -
Blo13g00439 397 SUPERFAMILY FAS1 domain 33 176 IPR036378 -
Blo13g00439 397 MobiDBLite consensus disorder prediction 361 377 - -
Blo13g00439 397 Gene3D FAS1 domain 192 330 IPR036378 -
Blo13g00439 397 Gene3D FAS1 domain 26 176 IPR036378 -
Blo13g00439 397 ProSiteProfiles FAS1/BIgH3 domain profile. 188 327 IPR000782 -
Blo13g00439 397 MobiDBLite consensus disorder prediction 337 378 - -
Blo13g00439 397 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 390 IPR033254 -
Blo13g00439 397 ProSiteProfiles FAS1/BIgH3 domain profile. 27 175 IPR000782 -
Blo13g00439 397 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 16 390 - -
Blo13g00439 397 SMART fasc_3 226 330 IPR000782 -
Blo13g00439 397 SMART fasc_3 63 178 IPR000782 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo13g00439 Blo15g00440 CCT
Blo13g00439 Blo15g00440 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00134 Blo-Chr1:1834249 Blo13g00439 Blo-Chr13:24639403 7.00E-93 dispersed
Blo01g01347 Blo-Chr1:51159178 Blo13g00439 Blo-Chr13:24639403 9.60E-34 dispersed
Blo13g00439 Blo-Chr13:24639403 Blo13g01075 Blo-Chr13:32916963 1.80E-35 dispersed
Blo13g00439 Blo-Chr13:24639403 Blo03g01484 Blo-Chr3:41609459 2.00E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00439 - - qsu:112016062 526.554