Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00447 ATGGGTCTCTCAAGTCTTCCTGCTCCATCAGAAGGTGTCCTCTGCATACTCCTTGTCAACACTGCATTTGTCATTTCCATCTTCAAAGCCATCGTTCGACCCATTCTTCACCTTTTCTGCTCTCAAATGTCGCCTGCAACCCCCATCTCAATCGAAAATCGCTCAGAACCGATCGATTTTCGTCACGATTCCCCTCTTGATTACGTCGACAAATTTCGAGACCTTGCCCGATCGATCCATTTCGAGGAAGCGCTGGCCTGTAAATTTCCGGAGCACGAATGCTCCGTCTGCCTAACGCAGTTTGAACTCAAATCAGAGGTAAACCAATTGTCGTGTGGTCATCTTTTTCACAAAATCTGCTTGCAGAAGTGGCTGGACTACTCCAATTTTACGTGCCCTCTTTGCCGGACTCCTCTAATGGCGGAAGAAGAGGCTTTCTAG 441 47.85 MGLSSLPAPSEGVLCILLVNTAFVISIFKAIVRPILHLFCSQMSPATPISIENRSEPIDFRHDSPLDYVDKFRDLARSIHFEEALACKFPEHECSVCLTQFELKSEVNQLSCGHLFHKICLQKWLDYSNFTCPLCRTPLMAEEEAF 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24820990 24821430 - BLOR05728 Blo13g00447 68842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00447 146 SUPERFAMILY RING/U-box 93 140 - -
Blo13g00447 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 145 IPR013083 -
Blo13g00447 146 SMART ring_2 94 135 IPR001841 -
Blo13g00447 146 PANTHER - 1 143 IPR044249 -
Blo13g00447 146 Pfam Ring finger domain 93 136 IPR001841 -
Blo13g00447 146 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Blo13g00447 146 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 143 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo13g00447 Blo15g00434 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00447 Blo-Chr13:24820990 Blo01g00383 Blo-Chr1:4374573 7.21E-13 dispersed
Blo12g00238 Blo-Chr12:15175975 Blo13g00447 Blo-Chr13:24820990 5.61E-06 transposed
Blo13g00447 Blo-Chr13:24820990 Blo15g00434 Blo-Chr15:6322877 9.03E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00447 K16285 - pop:7456018 187.193