Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00462 ATGTTATATGACTCTTGGTTTCAGATTTCTCAATGCTATCAAGCAGTTTCTCTGCTTATCCTTGTTGAAGAACAATCAGGGCTGAAAGCAGAAATTGGTATATTCTTTCCCATGCTTGTCCTCCGTGTTCTCGAGAACGTGCTCCAGCCTAGTTTTTTGCAGAAAATGACTGTCCTCAACTTAGTGGATAAGATATCTCAGGACTCTCAGATTATTGTTGACATTTTTGTCAATTATGACTGTGATGTTGATGCACCAAATATTTTTGAAAGGATTGTCAATGGTCTTTTGAAAACTGCTTTAGGACCTCCTTCTGGTTCAACTACAACTTTGTCTCCAGTACAGGATGTCACATTTCGTCATGAATCTGTTAAATGCTTGGTCAGCATTGTTAGATCAATGGGAACTTGGATGGATCAGCAGCTGAGTTTGGGTGATTCGTACCTGCCAAAGAGCTCTGATACTGATACTGTGACCGAGAATCATTCTGTAGTGAATGGAGAAGAAGGAACTGTTGCTGATTCTGAGCTCCATCCAGAATTAAATTCTGAATTTTCTGATGCTGCTACCCTTGAGCATCGTCGAGCTTACAAAATCGAACTCCAGAAAGGTATCTCCTTATTCAATAGAAGACCTTCCAAAGGTATTGAGTTTTTGATAAACACCAAAAAAATTGATAGTTCTCCGGAAGGCGTGGCTTCTTTCATTAAGAACACCAGCGGCCTTAATGAAACCATAATCGGTGATTACCTGGGTGAAAGAGAAGAGTTTCCTTTGAAAGTGATGCATGCTTATGTTGATTCATTCAATTTTAAAGAGATGGATTTCGGGGAAGCCATAAGGTTTTTCCTACGGGGCTTTAGGTTACCTGGAGAAGCACAAAAGATTGATCGCATTATGGAGAAGTTTGCCGAGCGATATTGTATATGTAATACAAATTCATTTACCAGTGCAGATACTGCCTATGTTCTTGCTTACTCTGTGATAATGCTTAACACGGACGCCCATAATAATATGGTGAAAGATAAGATGTCCAAGGCTGACTTTGTCCGGAACAATCGAGGAATAGATGATGGTCAAGATTTACCTGAAGAGTATCTTGGTGCCCTTTATGATCAAATTGTTAAGAACGAAATAAAGATGAAGGCTGATTCTTCTGCACCGCATAACAAGCAGCCTAACAGCATTAATAAGTTGTTGGGTTTAGATGGAATACTCAATCTCGTATCTTGGAAACAGACAGAAGAAAAGGCATTGGGTGCAAATGGGCTTCTTATTAGGCACATTCAGGAGCAGTTTAAGGCAAAGTCTGGAAAGTCAGAAATTGTTTATCATGCTGTGGTGGATGTGGCAATATTGAGGTTTATGGTGGAGGTCTGCTGGGGTCCTATGCTAGCTGCTTTTAGTGTAACTCTCGACCAAAGCGATGATAGACTTGCTACTTCGCATTGCTTACAGGGATTTCGGCATGCTGTGCATGTTACGGCATTGATGGGTATGCAGACTCAAAGAGACGCTTTTGTGACATCCGTCGCCAAGTTTACTTTTCTTCATTGTGCTGCAGACATGAAGCAAAAAAATGTGGATGCTGTAAAGACAATAATAGCTATTGCCATTGAGGATGGTAACTATCTTCAGGATGCATGGGAACACATATTAACATGTCTCTCCAGAATTGAGCATCTGCAACTATTGGGAGAGGGTGTACCAACTGACGCATCCTTTTTGACGGCATCAAATGAAGGAGAAGAAAAAGCACCCAAATCCCTTGGCCTGTCATCATTGAAGAGAAAAGGAACTCTCCAGAACCCAGCTGTTATGGCTGTTGTTCGTGGTGGTTCATATGATAGCACATCTCTGGGAATGAGTGCTCCAGGATTGGTAACTTCAGAACAGATCAGTAACTTTATATCAAACTTGAATTTGCTGGATCAGATTGGAACTTTTGAGTTGAATCACGTATTTGCCCATAGCCAAAGGTTGAACAGTGAGGCCATTGTGGCATTTGTGAAGGCTTTGTGCAAAGTGTCTGTTTTTGAGTTGCAGTCTCCAACTGATCCTCGTGTATTCAGCCTTACAAAACTTGTTGAGATAGCGCATTACAATATGAATCGCATCAGATTAGTTTGGTCTCGCATATGGAGTGTTCTCTCGGATTTCTTTGTTTCAGTTGGTTTATCAGAAAATCTCTCAGTCGCCATATTTGTGATGGATTCACTGAGGCAGCTTGCTGTGAAATTCTTGGAGCGTGAGGAGCTTGCAAATTACAACTTCCAGAATGAATTTTTAAGACCCTTTGTGATTGTTATGCAGAAAAGCAGTTCTACAGAAATTAGGGAATTAATAGTTCGGTGCATTTCGCAAATGGTGCTCAGTCGCGTCTGCAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGGTTTTTACGGCTGCCGCAGCAGATGAGAGAAAGAATGTTGTCTTGTTAGCCTTTGAGACAGTGGAAAAAATTGTACGCGAATACTTCCCTTATATTACGGAGACAGAGACTGTGACTTTCACTGATTGTGTTAGATGCCTTATCACCTTCACGAATAGCAGATTTAACAGTGATGTTAGCCTCAATGCTATTGCATTTCTGCGCTTTTGTGCTGTGAAACTCGCTGAGGGAGGACTTGTTTGCAATGAGAGGAGCATGGTTGATGGTTCTTCCATTCCTTTAAACGAGGGTGCTTCAAAAGGGGCTATGTTCACTGAGAAAGATGATCCCGCCTCCTATTGGGTTCCTTTGCTAACAGGGCTGTCAAAACTAGCTTCTGATCCTAGGTCAGCCATAAAAAAGAGTTCTGTGGAAGTACTTTTTAACATTCTGAAGGATCATGGTCATCTTTTCTCTCGTCAGTTTTGGGTTAGTGTTATGAATACAGTCGTATTTCCTATATTCAGTAGCATGCATGACAAGGTGCCCATGGAGGAGGATCATAGCTTAATTTCTTCAAGCCCTGCTCATTTTGAAGGAAGCTCATTGGATTCTGAAACTTGTGTTGTGGCAACACAGTGCTTAGTAGATCTGTTTATCAGTTTTTTCAATGTAGTGAGATCTCAACTACCAGGTGTGGTTATAATACTGACAAAATTTATAAGAAGTCCTCTTCAGCCTTCTGCTAGCACAGGAGTTGCTGGATTGACACGTTTGGCCAGTGATTTGGGAAGCAGACTGACTGAAGAAGAATGGAGAGAGATCTTTCTAGCTTTAAAGGAAGCAGCTACATTGACCGTGCCTGGATTTATGAAGGCACTCAGAAGCATGGATATCGTTGAGGTGGCTGCAATTTCTTCATCATGCACTGATAATGATGTTCCATCTGAACATGAATTCACCAATGATGATCTTGAGGATGATAATCTACAAATTGCTTCCTATGTGATTTCCACAATGAAGAGTCATATTGCCATGGAGCTTCTTATTATTCAGGTCATCACTGATCTTTATTCGAAGCACCTCCACTCTTTATCTGCTGGTAACTTATCAATACTTCTCGATATATTTTCCTCCATTGCCGCACATTCCCTCAAATTAAATTCCGAGACAGTTCTTCAGAAAAAGCTACAAAAAGCGTGTTCCATCTTGGAGCTCTCCTACCCACCAGTGGTTCACTTTGAAAACGAGGCTTACAATAATTACCTCAATTTCCTCCAGCATTTACTTATTGATAACCCATCCATCTCTGCGGAAATGAACATAGAATCACAACTTGTGGCAGTATGTGGACAAATTTTGCAGATATACCTAAACTGTACAGGCTCTCAATCTGCCCAACACAAACAAAACAATCAGCCAACACGGTATTGGATTCTTCCACTCGGCTCAGCTAAAAAGGAGGAATTGGCCACGAGGACTTCCTTAGTTGTCTCGGCATTGCAAGTTTTGATTGGCTTGGAAAGTAACTCATTCAAGAGGTATGTCTCTCAAATTTTTCCATTGTTAGTAGATCTTGTGAAGAGTGAGCATAGTTCTGGAGAAGTTCAACGTGTTTTGAGCAACATTTTTCAGTCTGTCATAGGGCCGATAATCATTCGATGA 4062 40.99 MLYDSWFQISQCYQAVSLLILVEEQSGLKAEIGIFFPMLVLRVLENVLQPSFLQKMTVLNLVDKISQDSQIIVDIFVNYDCDVDAPNIFERIVNGLLKTALGPPSGSTTTLSPVQDVTFRHESVKCLVSIVRSMGTWMDQQLSLGDSYLPKSSDTDTVTENHSVVNGEEGTVADSELHPELNSEFSDAATLEHRRAYKIELQKGISLFNRRPSKGIEFLINTKKIDSSPEGVASFIKNTSGLNETIIGDYLGEREEFPLKVMHAYVDSFNFKEMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCICNTNSFTSADTAYVLAYSVIMLNTDAHNNMVKDKMSKADFVRNNRGIDDGQDLPEEYLGALYDQIVKNEIKMKADSSAPHNKQPNSINKLLGLDGILNLVSWKQTEEKALGANGLLIRHIQEQFKAKSGKSEIVYHAVVDVAILRFMVEVCWGPMLAAFSVTLDQSDDRLATSHCLQGFRHAVHVTALMGMQTQRDAFVTSVAKFTFLHCAADMKQKNVDAVKTIIAIAIEDGNYLQDAWEHILTCLSRIEHLQLLGEGVPTDASFLTASNEGEEKAPKSLGLSSLKRKGTLQNPAVMAVVRGGSYDSTSLGMSAPGLVTSEQISNFISNLNLLDQIGTFELNHVFAHSQRLNSEAIVAFVKALCKVSVFELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRIWSVLSDFFVSVGLSENLSVAIFVMDSLRQLAVKFLEREELANYNFQNEFLRPFVIVMQKSSSTEIRELIVRCISQMVLSRVCNVKSGWKSVFMVFTAAAADERKNVVLLAFETVEKIVREYFPYITETETVTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCNERSMVDGSSIPLNEGASKGAMFTEKDDPASYWVPLLTGLSKLASDPRSAIKKSSVEVLFNILKDHGHLFSRQFWVSVMNTVVFPIFSSMHDKVPMEEDHSLISSSPAHFEGSSLDSETCVVATQCLVDLFISFFNVVRSQLPGVVIILTKFIRSPLQPSASTGVAGLTRLASDLGSRLTEEEWREIFLALKEAATLTVPGFMKALRSMDIVEVAAISSSCTDNDVPSEHEFTNDDLEDDNLQIASYVISTMKSHIAMELLIIQVITDLYSKHLHSLSAGNLSILLDIFSSIAAHSLKLNSETVLQKKLQKACSILELSYPPVVHFENEAYNNYLNFLQHLLIDNPSISAEMNIESQLVAVCGQILQIYLNCTGSQSAQHKQNNQPTRYWILPLGSAKKEELATRTSLVVSALQVLIGLESNSFKRYVSQIFPLLVDLVKSEHSSGEVQRVLSNIFQSVIGPIIIR 1353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25220617 25232863 - BLOR05743 Blo13g00462 68857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00462 1353 SUPERFAMILY ARM repeat 688 1345 IPR016024 -
Blo13g00462 1353 Gene3D - 271 388 IPR023394 -
Blo13g00462 1353 CDD Sec7 197 379 IPR000904 GO:0005085|GO:0032012
Blo13g00462 1353 Pfam Domain of unknown function (DUF1981) 746 828 IPR015403 -
Blo13g00462 1353 Pfam BIG2 C-terminal domain 1146 1344 IPR046455 -
Blo13g00462 1353 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 15 1348 - -
Blo13g00462 1353 ProSiteProfiles SEC7 domain profile. 190 377 IPR000904 GO:0005085|GO:0032012
Blo13g00462 1353 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 1 15 1348 - -
Blo13g00462 1353 SMART sec7_5 194 379 IPR000904 GO:0005085|GO:0032012
Blo13g00462 1353 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 7 88 IPR032691 -
Blo13g00462 1353 Gene3D - 728 960 IPR011989 -
Blo13g00462 1353 Pfam Sec7 domain 198 379 IPR000904 GO:0005085|GO:0032012
Blo13g00462 1353 Gene3D - 190 270 - -
Blo13g00462 1353 SUPERFAMILY Sec7 domain 194 385 IPR035999 GO:0005085|GO:0032012
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00462 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - qsu:112002939 2094.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00287 Blo-Chr2:2770317 Blo13g00462 Blo-Chr13:25220617 0 dispersed
Blo13g00462 Blo-Chr13:25220617 Blo13g00773 Blo-Chr13:30446339 2.67E-71 dispersed
Blo13g00462 Blo-Chr13:25220617 Blo04g00264 Blo-Chr4:2011338 1.38E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00462 Blo_Chr13 FPKM 2.6655 2.723069 2.395145 2.629368 3.229343 4.657467 3.990624 2.360832 2.912704 2.606232