Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00469 ATGGTTTTGCTCGTTTTGCCGTTTATTCTCTGCTTCTTAACACTCTCAGAAGAGGTCTCCAGACCCGATGTCGTGAAAGTCGGAGCAATTATTACATTTGGCACCATTAATGGAGAAGTCTCGAAAATTGCATTGAAGGCTGCTGAAAATGATGTGAATTCTGATCCGAGCATTCTTGGTGGAAGTAAATTGTCCATATCCATGTACAACTCCAACTTCAGTGGTTTTCTTGGAATTATTGGGGCATTAAACTACATGGAGTCTAATACTATAGCTATTATCGGTCCACAAAGCTCGGTATTGGCGCATTCACTAGCCCATCTTGCAAACGAGCTTCATGTCCCCTTATTGTCATTTACAGCCCTCGACCCTGCTCTTTCTTCTTTACAGTATCCATACTTTGTCCAAACAGCTCCAAATGATAAGTTTCAGATGACCGCCATTGCAGATATGATTAGTTATTACGGTTGGGGCAAGGTTATTGCCATTTATAGTGATGATGATCAGAGCCGAAATGGAATTAGTGTATTAGGTGACAAGCTTATGCAGAGACGCTGCAAAATTTCCTACAAAGCAGCCCTTCCTCCTGACCCAACATCGACTAGGACTCAAGTGCAGCATGAATTGATGAAAATTAAAGTGATGAAAACTCGAGTAATTGTTCTGAACACCTTCAATACTACAGGTCTCTTGGTTTTTGGCGTTGCCAAGAATCTTGGAATGATGGAGAGTGGGTATGTCTGGATTACTTCTACATGGCTATCCACAGTTTTGGATTCAACTTTGCCACTTTCTACAAAGATTGCTGAGTCTGTGCAAGGTGTTCTCACACTTCGTCCACACACCCCGGATTCAGAAGGAAAAAGATCTTTCATCTTGCGTTGGAACAAACTTAGTAATGGCTCCATTGGATTGAACCCTTATGGTCTCTTTGCATATGATACCGTTTGGATGATTGCTCATGCAGTGAAAAGGTTATTTGATGAAGGAGGTACTATTTCATTCTCCAATTCTGCATATTTTAGCAATCTTGGGCGAGGGGCCATGAATTTTAGTGCTCTGAGCATATTTGATGAAGGAGAGCAATTGCTTAACAACATATTGAAGACGAATATGACTGGCCTGACAGGGCCTATTCAATTTACTTCAGACAGATCCTTTTTATACCCTTCATATGACATCATAAACGTAATGAAAACAGGTTACCAGCGAATTGGATACTGGTCCAACTATTCTGGATTGTCTGTTCTGCCTCCCGAGACTTTCTATGGAAAACAATACAACCTGTCAAACCAGTTTCTGGGCAATGTAATATGGTCCGGAGGTACAACAACAAAGCCTCGTGGATGGATTTTTGGAAACAATGGGATGCCATTAAGAATTGGTGTTCCAAACAGATTTAGTTTTCGTGAGTTTGTCTCTCAAGTTAATGGCACAAGTGCAGTCCAAGGATATTGCATTGATGTTTTTCTTGCTGCCATAAAACTACTTCCTTATCCAGTTCCTCATGAATTTATTTTGGTTGGAGATGGTCATGAAAATCCAAGCTACGATAAACTTGTAAATATGGTCACATCTGGGACCATTGATGCTGCTGTAGGTGATATTGCTATTGTCACAAATCGATCAAAGACTGTGGATTTCACTCAGCCTTATGCAGAGTCAGGGCTCCTGGTGGTGGCTCGGGTCAAAAAGTTGAATTCTAGTGCTTGGGAATTTACGAGGCCATTTACGCTAATGATGTGGATGGTCACATTACTTTTCTTTCTCATTGTCGGAGCAGTTGTGTGGATTCTAGAACATAAAAGAAATGACGATTTCCGCGGGCCACCGAGGAAACAAATTGCTACAATTTTCTGGAAAGGCTGGAGGGGTCACAAACGGTCCCACTTAAAATTTAGTCTCCTAAATAGAGTTTACTTACACAGTACAACTACACCACTAATCGATACGAAAAACGATTGCAGATGTGATCCAAAAATATCAAGAGTATTTTTCTCGCACAGTTATAATTTAACAGTTAAGAAGTTTAGCTTCAGTACTATGTTTTTTGCGCATAGAGAAAATATGGAGACCATACTTGGTCGCATGGTGCTAATCGTCTGGCTCTTTGTCGTTCAAATCATCAACTCAAGCTACACTGCTAGCCTGACCTCAATACTCACAGTGCAACAGCTTTCCTCGCCCATCTCTGGAATTGAAACTTTAATAACTAGCGATGTGCTCATAGGATTCCAAGTAGGTTCTTTTGCAGAAAACTATTTGATCAAGGAGCTGGGTATCCCAAAATCAAGGCTTATTGCTCTCGGCACCCCAGAAGATTATGCTAATGCCCTCGATGGAGGAATTGTCGGTGCTGTGGTTGATGAAAAGCCATACATTGAACTCTTTCTGTCTGATTATTGCAAATTCTCTGTCAGAGGACAGGAGTTTACAAGACGTGGTTGGGGATTTGCGTTTCCACTGGGGTCGCCTTTGGCCGTTGACATGTCCACTGCAATTCTCATGCTAACAGAAAAAGGCAATCTTCAAAAAATTCATGAAAAATGGTTTTCAAGGAAAGGTTGCAGTGGTCAAAGCGCTGGAGTTGTCGATCAGCTTAGCTTACGAAGCTTCGGGGGACTATTCATCGTTTGCATAGTTTCCAGTTTTCTTGCCTTTTTTATACATTTCTGTATCATCTTCTACAAGTTCAGCCGATATAACTCAGAGGGCTCGAATTCTCCGACTGTACCAGGCACTAGCCCCTCCTGCCTTCAAACTTTCCTTTCCTTTATTGACGAAAAGGACGAACAGCAGAAAAGCAAGCCAAAACGGAAGCACGTAGATGGAGAATAA 2838 41.54 MVLLVLPFILCFLTLSEEVSRPDVVKVGAIITFGTINGEVSKIALKAAENDVNSDPSILGGSKLSISMYNSNFSGFLGIIGALNYMESNTIAIIGPQSSVLAHSLAHLANELHVPLLSFTALDPALSSLQYPYFVQTAPNDKFQMTAIADMISYYGWGKVIAIYSDDDQSRNGISVLGDKLMQRRCKISYKAALPPDPTSTRTQVQHELMKIKVMKTRVIVLNTFNTTGLLVFGVAKNLGMMESGYVWITSTWLSTVLDSTLPLSTKIAESVQGVLTLRPHTPDSEGKRSFILRWNKLSNGSIGLNPYGLFAYDTVWMIAHAVKRLFDEGGTISFSNSAYFSNLGRGAMNFSALSIFDEGEQLLNNILKTNMTGLTGPIQFTSDRSFLYPSYDIINVMKTGYQRIGYWSNYSGLSVLPPETFYGKQYNLSNQFLGNVIWSGGTTTKPRGWIFGNNGMPLRIGVPNRFSFREFVSQVNGTSAVQGYCIDVFLAAIKLLPYPVPHEFILVGDGHENPSYDKLVNMVTSGTIDAAVGDIAIVTNRSKTVDFTQPYAESGLLVVARVKKLNSSAWEFTRPFTLMMWMVTLLFFLIVGAVVWILEHKRNDDFRGPPRKQIATIFWKGWRGHKRSHLKFSLLNRVYLHSTTTPLIDTKNDCRCDPKISRVFFSHSYNLTVKKFSFSTMFFAHRENMETILGRMVLIVWLFVVQIINSSYTASLTSILTVQQLSSPISGIETLITSDVLIGFQVGSFAENYLIKELGIPKSRLIALGTPEDYANALDGGIVGAVVDEKPYIELFLSDYCKFSVRGQEFTRRGWGFAFPLGSPLAVDMSTAILMLTEKGNLQKIHEKWFSRKGCSGQSAGVVDQLSLRSFGGLFIVCIVSSFLAFFIHFCIIFYKFSRYNSEGSNSPTVPGTSPSCLQTFLSFIDEKDEQQKSKPKRKHVDGE 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25423504 25432541 - BLOR05750 Blo13g00469 68864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00469 945 Pfam Bacterial extracellular solute-binding proteins, family 3 514 852 IPR001638 -
Blo13g00469 945 PIRSF IGluLR_plant 1 632 IPR017103 -
Blo13g00469 945 PIRSF IGluLR_plant 667 943 IPR017103 -
Blo13g00469 945 Pfam Ligand-gated ion channel 853 881 IPR001320 GO:0015276|GO:0016020
Blo13g00469 945 Gene3D - 786 816 - -
Blo13g00469 945 Gene3D - 43 389 - -
Blo13g00469 945 SUPERFAMILY Periplasmic binding protein-like II 435 853 - -
Blo13g00469 945 CDD GluR_Plant 458 851 - -
Blo13g00469 945 Gene3D - 570 754 - -
Blo13g00469 945 SUPERFAMILY Periplasmic binding protein-like I 20 450 IPR028082 -
Blo13g00469 945 Gene3D - 817 851 - -
Blo13g00469 945 CDD PBP1_GABAb_receptor_plant 26 416 IPR044440 -
Blo13g00469 945 Gene3D - 456 569 - -
Blo13g00469 945 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 630 - -
Blo13g00469 945 PANTHER GLUTAMATE RECEPTOR 3.1 16 630 - -
Blo13g00469 945 Pfam Receptor family ligand binding region 43 397 IPR001828 -
Blo13g00469 945 SMART GluR_14 460 853 IPR001320 GO:0015276|GO:0016020
Blo13g00469 945 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 672 941 - -
Blo13g00469 945 PANTHER GLUTAMATE RECEPTOR 3.1 672 941 - -
Blo13g00469 945 Gene3D - 140 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00469 Blo-Chr13:25423504 Blo15g00499 Blo-Chr15:8416282 0 dispersed
Blo13g00469 Blo-Chr13:25423504 Blo02g00114 Blo-Chr2:837458 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00469 K05387 - rcu:8270549 1204.12