Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00472 ATGGCGTCGGCACATAATCAAGCGCCGAGTACGGATCTATTTGACGCTTATTTTCAGCGAGCTGATTTGAATCGGGATGGCCGTATTAGTGGCGTTGAAGCTGTCACTTTCTTCAATGGCTCTGGATTGTCTAAACAGGTCCTTGCTCAGATATGGGCGCTGGCTGATCAGAGGCAGATTGGTTTCCTTGGTCGATCAGAGTTTTATAACGCCCTTAAGCTGGTTACTGTGGCACAAAAAAAGCGGGAACTAACTCCTGAGATTGTAAAAGCGGCATTATATGGACCACATACAGATAAAATACCAGCACCACAGATAAATGTAAATGCCATGCCAGCATATCAGCTCAATTCTACTCCAGCTGCTACTTCTTTCCAAAACCTTGGATTTGGAGGACAACAAGTTCCTCCATTTGTTAGTGTAAATCCACAACAGGCTCCTTTTCAAGCAAGTCAATTATTAAATTCTCCACAGTCGGCATCAGTGACCAATTCCACTCCAGTCCAACTTAGTGGCTCACAAGGATTGCCAGAAGGTGGCTCTGTCGGAAGAAATTCCTCTCCAATCACGAGCATCTCACTTGATCAGGCTGGTGCGGGTGGTGGAGTTCAGGGAATTTCTGCACAGTTTCCAGACAACAGAGTTGGTCCTTCAACTTCCCAAGTTGGGTTTGGAGTATCAAAATCAGGATCCACAGCTTCTCTACCACCTAGACCTCAGCCATCTGGGATAAGACCTTCCGGACCACAGTCTAAGGATTCTAAAGTAATGAGTATTTCTGGTAATGGGGTTGCCTCTAACTCATTTTTTGGAGAAGATGTATTTTCTGCTACTCCATCTCCTCTGAAGCAAGATTCTTCCTCAGGAGGCACTTCATCAGCCAACATTCCAGGATCTTCTGGGAAAGAGCCTTCAGTAAGGCCTAGTGTTGATTCTGCAGGGAGTTTGTTACCGAAGCAACCTGATGGTGGTCAATTCAAGCAGTCTCAGGTAGTTTTCAGTTCACATCAACAGGTCTTGACTAACCCTTCTTCGTCTGGAATTTCACTTGGGTCAGAGATCTCTGTTTCTAGTCAGTCCCCACATCCATGGCCTAGGATGACACATATTGACGTGCAGAAGTATTCCAAAGTATTTATCGAAGTAGACAAAGATAGAGATGGAAAAATTACCGGGGAAGAAGCACGCAATTTGTTTCTGAGTTGGAGATTACCAAGAGAGATATTAAAGCAGGTATGGGACTTATCCGATCAGGATAATGATAGCATGCTTTCTCTCAGGGAGTTCTGCATTGCTCTATACATAATGGAGAGGTATAGGGAAGGTCGTCCTCTTCCAGCAGTGGTCCCGAGCAACATCATGTTTGACTTTCCTAATAGCACTCCACCTTTGACAAACTATAATAGTGCTGCTTGGGGACCGGGATCTGGATTCCAGCAGCAGAAAGAGGTTTCTGGTTCCAATACACACTCAACCCCAGATACTGGAGTTACAGTTACTCCTGCGATACCACCGCCTATTCCCAAAGCAGATGAAGGGTTGCAGATTAGTGAGCAGAAATCGAGAGTGCCAGTGTTAGAGAAACACCTTGTAAATCAACTTATTACAGAGGAGCAGAACTCGCTTAACACAAAGTTCCAAGAGGCGACTGATGCTGAGAAAAAGGCACTCATTCTGTCTTTCCTGTTCTTTGACTGGGTTGAAGAGCTGGAGAAAGAAATTTTAGAATCAAAGGAGAAAATTGAATTTTACCGTGCTAAAATGCAGGAACTTATTCTTTACAAGAGTAGATGTGACAATCGCCTTAATGAGATCACAGAAAGGGTGTCTGCAGATAAACGTGAGGCTGAGTCCCTTGCAAAGAAATATGAAGAGAAGTACAAACAAATTGGAGATGTAGCCTCCAAGTTAACTATTGAAGAAGCGACCTTCCGGGCTATACAGGAGAGGAAGTTGGAGTTATACCAGGCAATTGTAAAGATGGAACAAGATGGTAATGAAGATAATGTAATTCAGGTTCGTGCTGATCGCATCCAGTCAGATCTTGATGAGTTAGTGAAAGTTCTTAATGAACGATGCAAGACTTATGGGTTACGGACAAAGCCGACAACTTTGACTGAACTTCCTTTTGGTTGGCAACCTGGTATCGAAGAAAGCTCTGCTGACTGGGATGAAGAATGGGATAAGTTTACTGATGAAGATGAGATGCTTTTGATAAAGGCCAGGGAAAGTTACCATCGTAAGGCAAGGAGAAACGATCTCCAGCGGTTAGTGTTGACACCAGAGAAGGAAAAGGACATGAAATTCGTAGCAGCGAAGAATTACCTTCATCAAACAGGGAAGAAAACCTTCAAAGAAGATGGGAAAATCAGATTGCAGATGGTCGGGAACCAAGCTGGTCCGACCTGCAAATGCAAATTCTGA 2424 44.02 MASAHNQAPSTDLFDAYFQRADLNRDGRISGVEAVTFFNGSGLSKQVLAQIWALADQRQIGFLGRSEFYNALKLVTVAQKKRELTPEIVKAALYGPHTDKIPAPQINVNAMPAYQLNSTPAATSFQNLGFGGQQVPPFVSVNPQQAPFQASQLLNSPQSASVTNSTPVQLSGSQGLPEGGSVGRNSSPITSISLDQAGAGGGVQGISAQFPDNRVGPSTSQVGFGVSKSGSTASLPPRPQPSGIRPSGPQSKDSKVMSISGNGVASNSFFGEDVFSATPSPLKQDSSSGGTSSANIPGSSGKEPSVRPSVDSAGSLLPKQPDGGQFKQSQVVFSSHQQVLTNPSSSGISLGSEISVSSQSPHPWPRMTHIDVQKYSKVFIEVDKDRDGKITGEEARNLFLSWRLPREILKQVWDLSDQDNDSMLSLREFCIALYIMERYREGRPLPAVVPSNIMFDFPNSTPPLTNYNSAAWGPGSGFQQQKEVSGSNTHSTPDTGVTVTPAIPPPIPKADEGLQISEQKSRVPVLEKHLVNQLITEEQNSLNTKFQEATDAEKKALILSFLFFDWVEELEKEILESKEKIEFYRAKMQELILYKSRCDNRLNEITERVSADKREAESLAKKYEEKYKQIGDVASKLTIEEATFRAIQERKLELYQAIVKMEQDGNEDNVIQVRADRIQSDLDELVKVLNERCKTYGLRTKPTTLTELPFGWQPGIEESSADWDEEWDKFTDEDEMLLIKARESYHRKARRNDLQRLVLTPEKEKDMKFVAAKNYLHQTGKKTFKEDGKIRLQMVGNQAGPTCKCKF 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25547165 25554334 - BLOR05753 Blo13g00472 68867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00472 807 MobiDBLite consensus disorder prediction 276 306 - -
Blo13g00472 807 CDD EH 375 441 IPR000261 GO:0005515
Blo13g00472 807 MobiDBLite consensus disorder prediction 211 238 - -
Blo13g00472 807 MobiDBLite consensus disorder prediction 276 326 - -
Blo13g00472 807 MobiDBLite consensus disorder prediction 476 511 - -
Blo13g00472 807 SUPERFAMILY EF-hand 362 454 IPR011992 -
Blo13g00472 807 Pfam Cytoskeletal-regulatory complex EF hand 365 436 IPR000261 GO:0005515
Blo13g00472 807 MobiDBLite consensus disorder prediction 245 260 - -
Blo13g00472 807 Gene3D - 7 99 - -
Blo13g00472 807 CDD Prefoldin 567 687 - -
Blo13g00472 807 MobiDBLite consensus disorder prediction 152 194 - -
Blo13g00472 807 Coils Coil 567 587 - -
Blo13g00472 807 CDD EH 14 80 IPR000261 GO:0005515
Blo13g00472 807 SUPERFAMILY EF-hand 12 90 IPR011992 -
Blo13g00472 807 ProSiteProfiles EH domain profile. 371 454 IPR000261 GO:0005515
Blo13g00472 807 Coils Coil 602 633 - -
Blo13g00472 807 MobiDBLite consensus disorder prediction 476 498 - -
Blo13g00472 807 SMART efh_1 47 75 IPR002048 GO:0005509
Blo13g00472 807 SMART efh_1 13 41 IPR002048 GO:0005509
Blo13g00472 807 SMART efh_1 408 436 IPR002048 GO:0005509
Blo13g00472 807 SMART efh_1 374 402 IPR002048 GO:0005509
Blo13g00472 807 SMART eh_3 6 98 IPR000261 GO:0005515
Blo13g00472 807 SMART eh_3 363 459 IPR000261 GO:0005515
Blo13g00472 807 MobiDBLite consensus disorder prediction 152 260 - -
Blo13g00472 807 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 7 744 - -
Blo13g00472 807 Gene3D - 366 455 - -
Blo13g00472 807 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Blo13g00472 807 PANTHER EH DOMAIN 7 744 - -
Blo13g00472 807 Pfam EF hand 15 30 IPR002048 GO:0005509
Blo13g00472 807 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Blo13g00472 807 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00472 K12472 EPS15; epidermal growth factor receptor substrate 15 - jre:109006655 842.417
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00607 Blo13g00472 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00817 Blo-Chr12:26533445 Blo13g00472 Blo-Chr13:25547165 0 dispersed
Blo13g00472 Blo-Chr13:25547165 Blo04g00607 Blo-Chr4:5259295 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00472 Blo_Chr13 FPKM 5.264411 6.618168 224.362335 214.70903 2.405064 1.900613 2.022259 0.22371 0.113753 0.159797