Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00473 ATGGGTAAGGTAGTGGAGAGGAGGAAGAAGAAGAAGAAAGGACGGCCCTCTCTATTGGATCTTCAAAAACGCACAATCAAACAACTCCAGCACCAGCAGAATAACTCCCACAATAACTCTCCCTCTCATTCCAGCCCTAATTCCAAAACTGCTACTGCCGTTCGGCGATCTATCCGCCGGAACCCCGTCCCCAATTCCCTCTCGCCAGAGGACGATTTCGAAGACCAAGGACACCCCGAAGACGACGAAGAATTTGACGGAAGGCGCCGCGAGAAGAAACTCAAGCTTGTCCTCCGACTGCCTTCTCAGAAATCGTCTTTGAATTCGTCGTCTTTGAATTCGGCTGGCTCGGATTCGAATGCGGAGGTGGGTAACGATGAGTCGGCTAAAAAGAAACGAAAGATCAATGCAATCGGGGATGGATCTGGGCTCGGAAACCTCGAAAAGGGTGAAAAGTCTATTTCTGGTCCAAATTCCACCAAACGCCTCCAAGGTTTGCTTTTGGATTTTGAACCCTCGACCCAATTACCAGATGAGAAGCTTTTATTGTTCATCCTGGACAGAATTCAAAAGAAGGACAGATATAAGGTGTTTTCTGAACCAGTGGACCCGGAAGAGCTTCCAGATTACCATGAAGTTATTGAGCACCCCATGGATTTTGCGACTGTAAGGAAGAAGCTTGCTAGCAGAGCTTATGGGAAATTGGAAGAGTTCGAGAAAGATGTTTTCTTAATCTGCTCAAATGCAATGAAGTACAATGCTCCAGATACAATCTACTTTAGGCAGGCGCGATCTATACAAGAATTGGCTAAAAAGAGCTTCAGGAATTTGAGACAAGATAGTGATGAGAACGAGCTAGAGCCGCCTAAAGTAGTCAGGAGAGGAAGGCCACCAACCAAGAATTTGAAACAGTCACAGGGTCAGGCGTTCTTTGAACGTGCTAGTTCCGAGTTCTCTGATGCTACCCTTGCCACGGGTGGAGAAAATACCAAGTATTATGATCTGCGAAAGGGACCTCATCTGTTGGAGAAGGCTGGTCTAGCAGAATTTGCTGGGAAATTTCCTGGTTCTCACTTTAATGAAGCTAATATGAATGGGTTGGCTGAGAACAGATTTGAGAGAAATGATGATTTTACTGGCTCTTTGTTGAAGAGTTACCCAACAAAGAATGGGAAAAAGCTAATCATATTAGATGAAAACAAGCGCAACACATATACACAATTCCAATTGTCAGCTGGTGGAAGAGAGCTACCAGTTATGAATACATTTGCTAGAGAGAGAAAGCAGCTAATGCCTGTGGGAATTCACACGGACAATGGTTATGCTAGAAGCCTTGCTCGATTTGCTGCTAATCTTGGCCCTCTTGCTTGGCAAGTTGCTTCTAAGAAGATTGAAAGATCTTTGCCTGCTGGAGTCAAGTTCGGCCGTGGTTGGGTTGTTGAGAATGATGTCATACCTTCTAGACCGCTGCTATCCCCATCAGCAGAAGTCCAAGTGTCATTATTTCCGGCTGCAGCATCTAGCACTCCTGATATTAAGGAGGTTAAATCACTCAAAATTTCTAATGAAAACAATGCCTCGGAGAAGCATATGCCTCCCATGAATTCTTGCTCACATGGAAATCTTCCCAAAACTCCTTTTGAATCTGCCTACACGTCATCATCCCCTTTTGGCACTAATCAATCTCCCGAACCCTTGACAGGAAAAAGTCATAACATAGTTAACAGCAGTGCGAATCCAGTTCAGCCAAAGCCGTCATTTCAGGTTCATAAAAGTCCTTTACAAACCGTTATGAATGGATATAGCAATGGTGCCTATGGCTTCCACCATTCAGATCAGCTAGGAAAACTAATTGGATCAGCTGGAGTAAACTTGGAGTCATCTCAAATGGTTGACGCAATCTCCACAACTACTAACTCCGTCGTCCACCATCCAGCAACTCCGAAAAATGTAATTCCGGCAAGTACGAGGAGAATAAACCCAGGAAGTTCATTATCTAAACATGATGAGGTGTTGACACCTCAGACCAAGGTTGAATCAGTTCCTCCAGATCTTAATGTCGGATTTCAGTCTACAGGATCACCGAGCTCTACCCGAGTCGACTCGACTACACATCCTGACTTAGCATTGCAGCTCTGA 2139 44.93 MGKVVERRKKKKKGRPSLLDLQKRTIKQLQHQQNNSHNNSPSHSSPNSKTATAVRRSIRRNPVPNSLSPEDDFEDQGHPEDDEEFDGRRREKKLKLVLRLPSQKSSLNSSSLNSAGSDSNAEVGNDESAKKKRKINAIGDGSGLGNLEKGEKSISGPNSTKRLQGLLLDFEPSTQLPDEKLLLFILDRIQKKDRYKVFSEPVDPEELPDYHEVIEHPMDFATVRKKLASRAYGKLEEFEKDVFLICSNAMKYNAPDTIYFRQARSIQELAKKSFRNLRQDSDENELEPPKVVRRGRPPTKNLKQSQGQAFFERASSEFSDATLATGGENTKYYDLRKGPHLLEKAGLAEFAGKFPGSHFNEANMNGLAENRFERNDDFTGSLLKSYPTKNGKKLIILDENKRNTYTQFQLSAGGRELPVMNTFARERKQLMPVGIHTDNGYARSLARFAANLGPLAWQVASKKIERSLPAGVKFGRGWVVENDVIPSRPLLSPSAEVQVSLFPAAASSTPDIKEVKSLKISNENNASEKHMPPMNSCSHGNLPKTPFESAYTSSSPFGTNQSPEPLTGKSHNIVNSSANPVQPKPSFQVHKSPLQTVMNGYSNGAYGFHHSDQLGKLIGSAGVNLESSQMVDAISTTTNSVVHHPATPKNVIPASTRRINPGSSLSKHDEVLTPQTKVESVPPDLNVGFQSTGSPSSTRVDSTTHPDLALQL 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25617984 25622885 + BLOR05754 Blo13g00473 68868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00473 712 ProSiteProfiles Bromodomain profile. 190 260 IPR001487 GO:0005515
Blo13g00473 712 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 712 - -
Blo13g00473 712 MobiDBLite consensus disorder prediction 685 712 - -
Blo13g00473 712 MobiDBLite consensus disorder prediction 1 89 - -
Blo13g00473 712 MobiDBLite consensus disorder prediction 101 123 - -
Blo13g00473 712 MobiDBLite consensus disorder prediction 277 302 - -
Blo13g00473 712 MobiDBLite consensus disorder prediction 544 574 - -
Blo13g00473 712 MobiDBLite consensus disorder prediction 641 712 - -
Blo13g00473 712 CDD Bromodomain 178 272 - -
Blo13g00473 712 SMART bromo_6 171 279 IPR001487 GO:0005515
Blo13g00473 712 Gene3D - 174 294 IPR036427 GO:0005515
Blo13g00473 712 MobiDBLite consensus disorder prediction 101 158 - -
Blo13g00473 712 MobiDBLite consensus disorder prediction 277 294 - -
Blo13g00473 712 MobiDBLite consensus disorder prediction 23 64 - -
Blo13g00473 712 PRINTS Bromodomain signature 241 260 IPR001487 GO:0005515
Blo13g00473 712 PRINTS Bromodomain signature 207 223 IPR001487 GO:0005515
Blo13g00473 712 PRINTS Bromodomain signature 223 241 IPR001487 GO:0005515
Blo13g00473 712 PRINTS Bromodomain signature 193 206 IPR001487 GO:0005515
Blo13g00473 712 MobiDBLite consensus disorder prediction 1 17 - -
Blo13g00473 712 Pfam Bromodomain 185 264 IPR001487 GO:0005515
Blo13g00473 712 SUPERFAMILY Bromodomain 175 285 IPR036427 GO:0005515
Blo13g00473 712 MobiDBLite consensus disorder prediction 653 671 - -
Blo13g00473 712 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 712 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00473 K22184 BRD9; bromodomain-containing protein 9 - qsu:111985563 695.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00606 Blo13g00473 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00901 Blo-Chr7:27906524 Blo13g00473 Blo-Chr13:25617984 1.16E-87 dispersed
Blo07g01014 Blo-Chr7:29840874 Blo13g00473 Blo-Chr13:25617984 4.05E-13 dispersed
Blo13g00473 Blo-Chr13:25617984 Blo12g00852 Blo-Chr12:26794248 6.23E-92 dispersed
Blo13g00473 Blo-Chr13:25617984 Blo04g00606 Blo-Chr4:5238852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00473 Blo_Chr13 FPKM 2.807852 2.832121 4.543455 4.944198 6.108181 5.784715 6.528676 6.234706 5.611752 6.917626