Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00474 ATGGGAATCTGCTGGTGTTCTCCAGCTGGTAAATCTACTGCTCCAAGCGCCACTGGACATCTTAATACTGATGTATCTCAAACAACCAGTAAGACAAATTCCTCAGTTGCAAGCTATATCTCCGGGACTAGCTGGTTTTCCGGCGGAAGCAGCGTCGATGTTGATCCAAATGGCTCGATTCTACCCTCCCCGGATTTAAGGCTCTTCAGCTTTACTGAACTGAAGACTGCAACTAAAAATTTCAGAGCTGATATGGTGCTCGGAGAGGGTGGTTTTGGTAAAGTCTTCAAAGGCTGGCTCGACAAAAGTGCGACAGTAATTGCAGTAAAAAAACTGAACTCAGAGAGCTTGCAAGGTTTGGAGGAGTGGCAGTCGGAAGTGAATTTCTTGGGAAGGCTTTCTCACCCGAATCTTGTAAAGCTGCTGGGATACGGTTGGGAGGATAGCTCTCTCCTTCTTGTTTATGAATTCATGCAAAGGGGTAGCTTGGAAAACCACCTATTTGGAAGGGGTGCTGCGGTTCAGCCACTGCCGTGGGATATTCGGCTTCAGATTGCCATAGGAGCAGCTCGAGGTCTAGATTTCTTACACGCTTCGGACAATAAAGTAATTTACAGAGACATCAAGGCTTCAAACATACTGCTGGATGGGTCCTATAATGCGAAGATATCAGACTTTGGATTGGCCAAAATGGGTCCTTCGGCCAGTCGATCCCATCTTACAACTCGAATTATGGGTACTAATGGCTATGCTGCTCCAGAATATTTAAATACTGGCCATCTCTATCTCAAGAGCGACGTGTATGGTTTTGGTGTAGTCCTGATCGAAATGTTGACGGGTTTACGAGCGATGGACACAAATCGTCCGAGAGAGCATCAGAGCTTGGTTGACTGGATCAAACCTTACCTCTCGCAAAGGAGAAAATTGAAGAAGGTGATAGATTCTGGATTGGAAGATAAATATCCCATAAAATCCGCCTCACAAATGGCGCAACTGGCTTTACAATGCATCGAGCAAGAACCGAGGAGCCGGCCTTCGATGAGAGAGGTTTTAGATACGCTAGAACAGATTGCAGCCGCCAAGGAGAGGCCAACGGAGCCCAAAGCCGGTCCCCGTTCCACTCTTCCAATGCCTCAACGCACAAGCCGGCAGCCTTGGGTCCATCAACCCCCACTTCACCAACACGGTGGTCGAGCTCCTAAGCCGCCACACATGTAG 1218 48.03 MGICWCSPAGKSTAPSATGHLNTDVSQTTSKTNSSVASYISGTSWFSGGSSVDVDPNGSILPSPDLRLFSFTELKTATKNFRADMVLGEGGFGKVFKGWLDKSATVIAVKKLNSESLQGLEEWQSEVNFLGRLSHPNLVKLLGYGWEDSSLLLVYEFMQRGSLENHLFGRGAAVQPLPWDIRLQIAIGAARGLDFLHASDNKVIYRDIKASNILLDGSYNAKISDFGLAKMGPSASRSHLTTRIMGTNGYAAPEYLNTGHLYLKSDVYGFGVVLIEMLTGLRAMDTNRPREHQSLVDWIKPYLSQRRKLKKVIDSGLEDKYPIKSASQMAQLALQCIEQEPRSRPSMREVLDTLEQIAAAKERPTEPKAGPRSTLPMPQRTSRQPWVHQPPLHQHGGRAPKPPHM 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25624794 25627468 + BLOR05755 Blo13g00474 68869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00474 405 SUPERFAMILY Protein kinase-like (PK-like) 65 383 IPR011009 -
Blo13g00474 405 Gene3D Transferase(Phosphotransferase) domain 1 158 370 - -
Blo13g00474 405 ProSitePatterns Protein kinases ATP-binding region signature. 87 111 IPR017441 GO:0005524
Blo13g00474 405 MobiDBLite consensus disorder prediction 358 405 - -
Blo13g00474 405 PANTHER OS01G0588500 PROTEIN-RELATED 22 366 - -
Blo13g00474 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Blo13g00474 405 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 22 366 - -
Blo13g00474 405 ProSiteProfiles Protein kinase domain profile. 81 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo13g00474 405 Gene3D Phosphorylase Kinase; domain 1 65 157 - -
Blo13g00474 405 CDD STKc_IRAK 87 357 - -
Blo13g00474 405 Pfam Protein kinase domain 83 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo13g00474 405 SMART serkin_6 81 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00474 - - - zju:107427219 561.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00117 Blo-Chr2:878975 Blo13g00474 Blo-Chr13:25624794 2.95E-169 dispersed
Blo04g00863 Blo-Chr4:9504801 Blo13g00474 Blo-Chr13:25624794 1.16E-150 dispersed
Blo13g00474 Blo-Chr13:25624794 Blo03g01236 Blo-Chr3:38589234 7.83E-131 dispersed
Blo13g00474 Blo-Chr13:25624794 Blo04g00605 Blo-Chr4:5231534 8.70E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g292 . . . . . . . . . Cmo11g01785 . . . . . Cpe04g00630 . Bhi05g01584 . . . . . . Cla02g00348 . . . . . . Cone12ag1276 Cone8ag1330 Cone3ag1248 . . Csa07g00185 . Cme01g01148 . Blo13g00474 . . . . . Bma08g00718 . . . Cma11g01334 Cma19g00797 Car11g01412 . . . . . . . . . . . . . . . . . Lsi11g01284 . Chy01g00595 Cme11g01308
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004416 1 3 2 1 1 0 2 0 0 1 1 0 2 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84628 PF00069 Pkinase 4.00E-48 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00474 Blo_Chr13 FPKM 7.600695 7.167904 7.828279 6.523292 14.980327 15.447149 11.86196 6.968413 3.223978 4.355627