Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00479 ATGGCGAATTTCTTGGAGCTCAGAGCATTGGGAACTCCCGTCAAATCGAACCGCGAAGGTGGAGACGGATACTTAAATCCTGAAAATGGGATCCTTCCACAGTATCAATTGTCCGCTGAAGGTGTTAAGCAAGCACATTTGGCTGGACAATTATTTCAAAAGGAGTTGATAGAAAATCACGTACCTCTTGAAAATGTTCGCATTTGCTATTCTCCTTTTTCCAGAACCACTCATACAGCCAAAGTGGTTGCCTCCGTGTTGAACCTTCCTTTTGAAGGTCCTCAATGTAAGGTTAATGAAGATCTCCGGGAGCGGTACTTTGGCCCTTCATTTGAGCTAATGTCTCATGATAAATATCCAGAAATCTGGGCTCTTGACGAGAAAGATCCATTCCTGCGCCCAGAAGGTGGAGAAAGTGTAAGAGATGTTGCCTCTAGACTTGCAAAAGCCATCTCAAGCATGGAATCAGAATTTCAAGGGTGTACAATCTTGGTAGTCAGCCATGGCGATCCCCTGCAAATTCTCCAAACAATCCTTAATGCTGCCAAAAAACACCACAATGGTTCGAGCTCTCCGGACTTGATATCGACTTTTGAAGCTGTCATAGTCCCATCCATCTTGTCACAACACCGTAATTTTGCGTTGCTTACGGGAGAGCTGCGAGCCGCAATTCAGATTTAA 681 44.64 MANFLELRALGTPVKSNREGGDGYLNPENGILPQYQLSAEGVKQAHLAGQLFQKELIENHVPLENVRICYSPFSRTTHTAKVVASVLNLPFEGPQCKVNEDLRERYFGPSFELMSHDKYPEIWALDEKDPFLRPEGGESVRDVASRLAKAISSMESEFQGCTILVVSHGDPLQILQTILNAAKKHHNGSSSPDLISTFEAVIVPSILSQHRNFALLTGELRAAIQI 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25683582 25686001 - BLOR05760 Blo13g00479 68874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00479 226 Gene3D - 18 202 IPR029033 -
Blo13g00479 226 Pfam Histidine phosphatase superfamily (branch 1) 35 179 IPR013078 -
Blo13g00479 226 CDD HP_PGM_like 37 179 IPR013078 -
Blo13g00479 226 PANTHER PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN 27 222 - -
Blo13g00479 226 SUPERFAMILY Phosphoglycerate mutase-like 25 180 IPR029033 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00479 - - - hbr:110637901 308.916
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g276 . . . . . Bpe12g00145 . . . . Cma02g00296 . Car02g00176 . . . . . . . . . . . . . . . . . . . . . Cone10ag1215 . . . . . Blo13g00479 . . . . . Bma08g00722 . Cmo02g00291 . . . . . . Cpe05g01340 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009397 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00479 Blo_Chr13 FPKM 10.464997 8.979418 5.102479 5.822056 8.403291 9.323904 9.501782 1.833537 1.922486 1.557263