Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00495 ATGGCTGCAGCTTTCACTCGTTGTTTCTCTTTAAATTCCGTTGTACCCAGAAACTCCATTGAGAAACGGGTCGCCGGATTCGGACCCGATAACATGGACGTAGACACCAACCCGAGATTCGGCAAGTCAAATCTCCCTTCTTGTAGAAAGAAATATAGTAATAATTCTTGGACAGAATCCCAGAATTTCTTGCTCAAGAGGACCATGTGTGAGTTTATGGATTCTGGTCGCATGGAAAGTGCACTCCATCTGTTTGAAAGATTGCCTCAAGTGGACATTTACATCTGCAATGTCTTGATCAGGGGATTGACGGATCAAGGAATGTTTAATGAAGCTATGAATATCTATTACAGGATGAATTTCCAAGGAATTGGGACTGATAAATATACGTACCCTTTTGCCATCAAATCAATTGGTGGGTTGTTATCATTTGAAGAAGGCCAAAAGGTCCACGCTAAGTTATTTAAAGTTGGGTTGGAATTGGACGTTTACATTTGCAATTCTCTTATTTTCATGTACGCAAAGCTTGGATTTATAGAGCTCGCAGAGAGGGTATTTCAAGAAATCCCTCTCAAAGACCTGGTCAGTTGGAATTCAATGATAAGTGGCTATGTTTTAGCCACGGATGGTCGGAGCTCGCTTGAGTCCTTTTCAAAAATGCAGAGGGTTGGATTTAAATGTGACCGATTCAGCTTGATTAATGCTTTTTCTGCTTGTTCTCTCGAGTGTTTTGAGCGAAGTGGGAAGGAGATTCACTGTCAAGCGCTTAGAACAGGGTTTGAAAATGACACAATGGTTCAAACGACTCTTGTCGATATGTATGCAAAATGTGGTAGAATCGATTATGCAGAGAAGGTATTCGAAAGAATTTCTGAAAGAAGTGTTGCCACTTGGAATGCAATGATTGGTGGGTATGCATCAAATAATCGATTCCCATCTTCATGTGCTTGCTTGAAAAGTATGCAAGAGACTGATAGTTTGAAACCGGATGAGATTACGTTGATAAATATTCTTCCTTCTTTTGGACGTGTTGGAACTCCTTTGGAAGGAAGAGTTATTCATGGGTATTCCATTAGACAAGGATTTCTCCCAAATTTACTATTGGAAACAGCACTTCTTACAATGTATGGAGAGCATGGTAAATTGAATTCGGCAGTGGATCTGTTCGATCAAATGGCTGAGAAAAATCTTGCATCACGGAATTCTTTAATAGCTGCTTACGTACGGTGTGGCCAGAGCCGGGTAGCCTTAGAGTTCTTCGAAAATCTTGTGACTAAACCTCTTGAAATCGATGCGGTAACAATTGCAACCATCTTACCTGCATATGCTGAATTAGGATCATTGAGGAAGGGGCTACAAATTCATGGATACGTTGTGAAATTGAAGTACTACTCTAATACTTTCGTCTCGAATTCTATGATCTACGTGTACGCTAAATGCGGAGATTTATTCTCGGCACAGAGGATTTTCGATACTATGTCGTTTAAGGATGTTATATCATGGAACACAATCATTATTGCTTATGGAATTCACGGGTTTGGGGCTAAATCGATTGAACTATTCGCACAGATGAAGAAAATGGGCGTCAAACCAAACGATAGCACCTTCGTTTCACTACTTTCGTCATGTGCCATTTCTGGTTTGGATGATATGGGGTGGAAGTTCTTCAATTCGATGAAAAAGGACTATAAAATGAGTCCCAGACTAGAGCACTACGGCTGTATGCTAGATCTCATTGGCCGGAGCGGTGACTTTGACCGAGCCAAAGCGTTTATCGAAGAAATGCCGATACCCTCTACGGCTCGAATATGGGGATCGTTACTTACGGCCAGCAGAAATCATAAAAACATCGAATTTGCTGAATTTTCGACCGAGAAGATTCTGTCCTTCGGCCATGATAATACTGGATGTTATATCGTGCTGGCTAATATGTATGCTGAAGCAGGAAGATGGGAAGATGTGAAAAGGATCAGAACTCTTATGAACAAACAAGGATTGCAGAAAACAGTTGGATTCAGCTCTGTTGAGATCAAATCCAAGTCCCACAGATTTTTCAACCGGGATCGATCTCATGCAGATTCGAACGTGATTTACGATGTTCTTGATGTACTTTTGCTAAAAATAGAAGACGAGTTTATTCATAATTTGGCCAAGTTAAGAATGGTAGAATTGGATAAACATAAATTGCACAGTCCCGAGACGCATAGCGTGAGATTGGCGATATGCAAAGCGCTGATCTCCTCGGAGATTGGAAAACCCGTGATTGTCAAGAAGAACACAAGAATATGCAAGGATTGCCATGTCGCTTGTAAGAAGATTTCGATAGTCACGAAAAGGGAGATCATTGTTGGGGATTTTAAGGTTTTTCACCACTTCAAAAATGGGAATTGCTCCTGTGGAGATTATTGGTGA 2412 40.88 MAAAFTRCFSLNSVVPRNSIEKRVAGFGPDNMDVDTNPRFGKSNLPSCRKKYSNNSWTESQNFLLKRTMCEFMDSGRMESALHLFERLPQVDIYICNVLIRGLTDQGMFNEAMNIYYRMNFQGIGTDKYTYPFAIKSIGGLLSFEEGQKVHAKLFKVGLELDVYICNSLIFMYAKLGFIELAERVFQEIPLKDLVSWNSMISGYVLATDGRSSLESFSKMQRVGFKCDRFSLINAFSACSLECFERSGKEIHCQALRTGFENDTMVQTTLVDMYAKCGRIDYAEKVFERISERSVATWNAMIGGYASNNRFPSSCACLKSMQETDSLKPDEITLINILPSFGRVGTPLEGRVIHGYSIRQGFLPNLLLETALLTMYGEHGKLNSAVDLFDQMAEKNLASRNSLIAAYVRCGQSRVALEFFENLVTKPLEIDAVTIATILPAYAELGSLRKGLQIHGYVVKLKYYSNTFVSNSMIYVYAKCGDLFSAQRIFDTMSFKDVISWNTIIIAYGIHGFGAKSIELFAQMKKMGVKPNDSTFVSLLSSCAISGLDDMGWKFFNSMKKDYKMSPRLEHYGCMLDLIGRSGDFDRAKAFIEEMPIPSTARIWGSLLTASRNHKNIEFAEFSTEKILSFGHDNTGCYIVLANMYAEAGRWEDVKRIRTLMNKQGLQKTVGFSSVEIKSKSHRFFNRDRSHADSNVIYDVLDVLLLKIEDEFIHNLAKLRMVELDKHKLHSPETHSVRLAICKALISSEIGKPVIVKKNTRICKDCHVACKKISIVTKREIIVGDFKVFHHFKNGNCSCGDYW 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26193250 26195661 + BLOR05776 Blo13g00495 68890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00495 803 TIGRFAM PPR: pentatricopeptide repeat domain 267 294 IPR002885 -
Blo13g00495 803 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Blo13g00495 803 TIGRFAM PPR: pentatricopeptide repeat domain 499 532 IPR002885 -
Blo13g00495 803 TIGRFAM PPR: pentatricopeptide repeat domain 94 124 IPR002885 -
Blo13g00495 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Blo13g00495 803 Pfam PPR repeat family 496 544 IPR002885 -
Blo13g00495 803 Gene3D Tetratricopeptide repeat domain 515 667 IPR011990 GO:0005515
Blo13g00495 803 Gene3D Tetratricopeptide repeat domain 347 460 IPR011990 GO:0005515
Blo13g00495 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Blo13g00495 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Blo13g00495 803 Pfam DYW family of nucleic acid deaminases 733 803 IPR032867 GO:0008270
Blo13g00495 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Blo13g00495 803 Pfam E motif 614 676 IPR046848 -
Blo13g00495 803 Gene3D Tetratricopeptide repeat domain 67 140 IPR011990 GO:0005515
Blo13g00495 803 Pfam PPR repeat 268 294 IPR002885 -
Blo13g00495 803 Pfam PPR repeat 95 123 IPR002885 -
Blo13g00495 803 Pfam PPR repeat 297 323 IPR002885 -
Blo13g00495 803 Pfam PPR repeat 401 423 IPR002885 -
Blo13g00495 803 Pfam PPR repeat 571 595 IPR002885 -
Blo13g00495 803 Pfam PPR repeat 165 190 IPR002885 -
Blo13g00495 803 Pfam PPR repeat 471 494 IPR002885 -
Blo13g00495 803 Pfam PPR repeat 195 225 IPR002885 -
Blo13g00495 803 Pfam PPR repeat 370 396 IPR002885 -
Blo13g00495 803 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 69 797 - -
Blo13g00495 803 Gene3D Tetratricopeptide repeat domain 244 346 IPR011990 GO:0005515
Blo13g00495 803 Gene3D Tetratricopeptide repeat domain 141 243 IPR011990 GO:0005515
Blo13g00495 803 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Blo13g00495 803 PANTHER BNAANNG11600D PROTEIN 69 797 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00495 - - - qsu:111999163 926.006
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00495 Blo-Chr13:26193250 Blo13g00661 Blo-Chr13:29338213 7.23E-66 dispersed
Blo13g00495 Blo-Chr13:26193250 Blo01g00864 Blo-Chr1:16365677 6.10E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g208 . . . . . Bpe12g00131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00495 Bda15g01022 . . . . Bma08g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017223 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00495 Blo_Chr13 FPKM 14.177969 14.664145 11.069988 10.461746 17.438856 16.686935 18.311453 8.299006 7.496054 7.726932