Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00498 ATGTCGGAATGGCGACGACGCGGTGCTGGCGATGACGAAGGCGCCAGTTCGCGGGCTACGGCGAGGAGGCAGCGATCGATGGCGATGAATGACTTCGGTGCACTGGGGACTCGGTTTGCGAAGGGACTGGCTGGAGCAAGTTCGATTCTGTGGTGTTCTGCTGACACTCACGATGGGGAGCAGGATTGGGTGGCCCACCTTCCAACTGGATTGTTCTTGCCGACGCTATACTGCACGATTAATGGCACAACTGCCTATAGAAGACTTGCAGAAGAGGAATGGGAATGGCTAGAGGTGAGCTCGGGTGATTCTCTCTTGGAAGCCGAGTGTGTCTTCTCTAGAGAATTCTGCAGGAGGTTGAGAGTTCTGTATTGTGGAATGAAGGATTTCCTGTTGGGATTTAATGGTATTGATAGATTATGCCTAATGGTCTCTGTCTATTGTGGGCTTCAGATTGACATGTTATGTAGCTTGGAAATAATGTCTTGTTTTGCTACTGCCTTTGAAATAACTGAGATTATGTTATGGAATTTTATGGATTTCACAATGTTGAACAGATTACAATTTAGCCTTGGTATTAACTTCGAGGATGATTCTATTTGGGATGTTGTCCCAACGGATAAGGAGCAACCTGTGCATGTCTTGACTTGGGACACACGTCGTAGGAGATCGCTGATTCAGTTCATCGGGCAGCTTCGGTATTTCTCTTCTTCCACGGAGGAATACTCCAAGAGAAACTACGCCAACAATGTTGCCGAGTACAACACTGTGATCAACTCTATCACTGGTCAAAGAAGACATTTCTTGTTAAGGGACGTGTATGACGATATGCTGTTGGATGGGGTGCAGCCTACGGTGGATATCTTTCATTCATTGATTACTGGAACCATGAAAGGGTCTCGCTTGCAAGACGCATTTTTTTTCAGAGACGAAATGAAGACCATGGGTCTGATTCCTGATGTAAATTTATTTAACAACTTGATTTCATTGTGTGGGAAATGTAAGAACTCTGATCAGGCGATCCAGATTTTGGATGAAATGAGGCGATATGAGGTGAAGCCGCATACACAAACGTACATCTGCCTCCTTAATGCTTGTGCAGCTGATGGCCGACTTGACCGGGTATATACAATTGTACGAGACATGTCTGCTGCTGGTCTTGGATTAGACAAGTTTTGCTATGCTGGGCTTATAACTGCTCATAAGAATAAGAAGCCTATAGCAGATGATTTTGCAACCAAAGTGGTTGAGTTTGTTGGACGTTCAAAAGAGTGGTCAACTGTTGAGGCATCAAGTGTTTCTGCTGAAAATGTGATGATGGGTGTGTCAGAAGAAGAATTGTATAATATTCCAACCGCTGAATATGTTCATAGACGTGGAGGATTTCTTAATAAGGAGCTAACTGTTTATCATGTTGCTTTACATGCTTGTGCAGACCTCAGGAACGTAGAGGTGGTGGAAATTCTTTTGGAGATGCTTAAAAAGGATGGGAAGACTCCTGATGTTTATATTGTGATTCAAGTTATAAGATGCTATTTACATTCTGGAGACATTGATAGTGGCCTAAAAACTTTTGAGGACTATATGAGTTCTGGGAAGCTTCCTGCAGCTGAGCTATATGTGAACAGAGGAGAGAAAATTGCGACATCGGAAAAGGAGGAGAAGGAGATAGCAGAAAAAATGTCGGAAAAAGAAGAGGCGGCTGAAGAGGAAGGGCAAACGGTAGCGCGCGACGATGGGTATGGAAGGGTCGGCGACGATAGGTATGGCAGGACCGGCGACGGTGAGAAAGGACGGACCGGCGACGGTAAGAAAGGATGGACCGACGACGGTGGGATCGACGAAATCGCTGTCCATGGAGAACACGATGAGATGGCAGTTTTCGATGGAAAAAATTGCTTGATGGTGGATACTGAGCTTGAAGAGGTAATTGCCATAAAGGAAGGAGATGAGCTGGTAGAGGTAATTGCAATGAAGGAAGAAGATGAGCTGGAAGAGATAATTGCCATGAAAGAAGGAGATGAGCTGGCAGAGACACTTATTGAGGGAGCCATGATTGGTTATACACCTAAGGGAATGCAATTGGCCCAGGACATGCTGGTGAATCTGAATTCCAGAGGATTTTTCTTGAGTCCAAAAATGGGGAATGACCTCCTCCTTGCAGCTTCTGGTGAAAAGACCGGTGGATATACAACTGCCAATTATATCTGGGATCTAATGCAAGCTCGGAAAACTGTTCCTTCATTTGCAGCTGTGGAGGCATACTACAAGGGTTTAAAAGAACGCGAGGTTCCCGAAGATGATGCAAGACTCTTGTTAGTTTCCCGGACCTACGACAAGCTTAAACAGAGATTAGGAAACAGAGCTACAAGACCGCACCTTGACAAGATGACGCAAGATGTTGAGATGAAGGAAACTGCAGCTCCTTCAAATTCTGCTTCCTCCGCTTCTCTTTCGACTTTACAACATTTGAAAGAGATTGCATCACTCATCGAGACTGGTGCCTATGCCCGGGAAGTTCGTAGAATTGTGCGAGCTGTACGGCTTACTATGGCATTGAGGCGGAAGTTAAAGGTGCCTGTGCTCTCTGCATTCCTTACTTTTGTCCTCACTCCGGGATCTGAGGTGCACACTAGGCTGTCTTCCTATCTTCCAAAGGAAGATGAGCAAGACATGGATGTTGATACTGCAACATCTGCAACATCTGCAACTCATGTTTCTGCAAAGCACCCTTTACCGGAGGTCGAGATATACTCCTACTTGGTTGTGCTAATATTTTTGATTGATCAGAAGAGGTATAATGAGGCCAAGTCTTGTGCTTCAGCAAGCATTGTTCGACTGAAGAACCTGAATAGGAGAACCGTTGACGTGTTAGCATCCAGGCTCTATTTCTACTATTCACTTAGCTATGAGCTCACTGGTGATCTTGCAGAAATTAGAGGTAACCTCCTTGCCCTGCATCGAATTGCAACATTGCGCCATGATGAGTTGGGCCAGGAAACTCTTCTAAACCTACTTCTGCGCAATTATCTGCATTACAATCTATACGATCAGGCTGAGAAGCTAAGATCCAAGGCTCCTCGTTTTGAAGCTCACTCAAATCAACAGTTCTGTCGATATCTGTTTTATTTGGGAAAGATTCGGACAATTCAGCTAGAGTATACAGATGCGAAAGAGTCCCTTCTGCAGGCTGCCCGGAAAGCCCCTGCTTCAGCCCTTGGATTCCGAGTTCAATGCAACAAATGGGCCATCATTGTTCGCCTACTGCTTGGAGAAATCCCTGAGAGAACAGTTTTCATGCAGAAACACATGGAGAAGGCTTTGAAGCCATATTTTGAACTTACAAATGCTGTGAGAATTGGTGATTTGGAGCTTTTTAGAACTGTTGCTGAGAACTTCTCGAGTACTTTCACGTCAGATCGTACCAATAATCTAATTGTTAGGCTGCGACATAATGTCATTAGGACTGGGCTCCGCAACATAAGTATTTCTTATTCCCGTATCTCATTAGCTGATGTTGCCAAAAAGCTGCGATTGGACTCTGCAAATCCAGTTGCTGATGCTGAAAGTATCGTGGCCAAGGCTATTCGCGATGGGGCAATAGATGCTACACTGGACCATGCCGAGGGATGCATGGTATCGAAGGAGACTGGGGACATCTACTCCACAAATGAGCCTCAAGCTGCTTTCAACTCGAGAATTGCATTTTGCCTCAATATGCACAACGAGGCAGTGAGAGCTCTTTGCTTTCCACCAAACTCCCACAAAGAGAAGGAAAGTGCAGAGAAAAGGAGGGAGAGGCAGCAGCAGGAGCAAGAGCTTGCAAAGCACATAGCCGAGGAGGATGATGATGATTTTTGA 3861 45.33 MSEWRRRGAGDDEGASSRATARRQRSMAMNDFGALGTRFAKGLAGASSILWCSADTHDGEQDWVAHLPTGLFLPTLYCTINGTTAYRRLAEEEWEWLEVSSGDSLLEAECVFSREFCRRLRVLYCGMKDFLLGFNGIDRLCLMVSVYCGLQIDMLCSLEIMSCFATAFEITEIMLWNFMDFTMLNRLQFSLGINFEDDSIWDVVPTDKEQPVHVLTWDTRRRRSLIQFIGQLRYFSSSTEEYSKRNYANNVAEYNTVINSITGQRRHFLLRDVYDDMLLDGVQPTVDIFHSLITGTMKGSRLQDAFFFRDEMKTMGLIPDVNLFNNLISLCGKCKNSDQAIQILDEMRRYEVKPHTQTYICLLNACAADGRLDRVYTIVRDMSAAGLGLDKFCYAGLITAHKNKKPIADDFATKVVEFVGRSKEWSTVEASSVSAENVMMGVSEEELYNIPTAEYVHRRGGFLNKELTVYHVALHACADLRNVEVVEILLEMLKKDGKTPDVYIVIQVIRCYLHSGDIDSGLKTFEDYMSSGKLPAAELYVNRGEKIATSEKEEKEIAEKMSEKEEAAEEEGQTVARDDGYGRVGDDRYGRTGDGEKGRTGDGKKGWTDDGGIDEIAVHGEHDEMAVFDGKNCLMVDTELEEVIAIKEGDELVEVIAMKEEDELEEIIAMKEGDELAETLIEGAMIGYTPKGMQLAQDMLVNLNSRGFFLSPKMGNDLLLAASGEKTGGYTTANYIWDLMQARKTVPSFAAVEAYYKGLKEREVPEDDARLLLVSRTYDKLKQRLGNRATRPHLDKMTQDVEMKETAAPSNSASSASLSTLQHLKEIASLIETGAYAREVRRIVRAVRLTMALRRKLKVPVLSAFLTFVLTPGSEVHTRLSSYLPKEDEQDMDVDTATSATSATHVSAKHPLPEVEIYSYLVVLIFLIDQKRYNEAKSCASASIVRLKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPASALGFRVQCNKWAIIVRLLLGEIPERTVFMQKHMEKALKPYFELTNAVRIGDLELFRTVAENFSSTFTSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVAKAIRDGAIDATLDHAEGCMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAVRALCFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 1286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26263782 26280599 + BLOR05779 Blo13g00498 68893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00498 1286 MobiDBLite consensus disorder prediction 551 609 - -
Blo13g00498 1286 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Blo13g00498 1286 MobiDBLite consensus disorder prediction 1252 1279 - -
Blo13g00498 1286 Gene3D - 1043 1242 - -
Blo13g00498 1286 Pfam Pentatricopeptide repeat domain 310 366 IPR002885 -
Blo13g00498 1286 Coils Coil 547 571 - -
Blo13g00498 1286 Pfam Proteasome regulatory subunit C-terminal 1219 1285 IPR013586 GO:0000502|GO:0030234|GO:0042176
Blo13g00498 1286 MobiDBLite consensus disorder prediction 1 23 - -
Blo13g00498 1286 TIGRFAM PPR: pentatricopeptide repeat domain 324 354 IPR002885 -
Blo13g00498 1286 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 797 1286 - -
Blo13g00498 1286 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1144 1237 - -
Blo13g00498 1286 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 797 1286 - -
Blo13g00498 1286 SUPERFAMILY Winged helix DNA-binding domain 1146 1220 IPR036390 -
Blo13g00498 1286 Coils Coil 1253 1280 - -
Blo13g00498 1286 MobiDBLite consensus disorder prediction 1 19 - -
Blo13g00498 1286 MobiDBLite consensus disorder prediction 1251 1286 - -
Blo13g00498 1286 Gene3D Tetratricopeptide repeat domain 230 452 IPR011990 GO:0005515
Blo13g00498 1286 Gene3D Tetratricopeptide repeat domain 453 592 IPR011990 GO:0005515
Blo13g00498 1286 SMART PINT_4 1144 1237 IPR000717 -
Blo13g00498 1286 Pfam PCI domain 1110 1215 IPR000717 -
Blo13g00498 1286 ProSiteProfiles PCI domain profile. 1038 1219 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00498 K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3 - cpap:110818950 795.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00627 Blo-Chr11:6435424 Blo13g00498 Blo-Chr13:26263782 8.49E-06 dispersed
Blo13g00263 Blo-Chr13:12386686 Blo13g00498 Blo-Chr13:26263782 2.22E-06 dispersed
Blo13g00498 Blo-Chr13:26263782 Blo01g01142 Blo-Chr1:41465052 2.33E-17 dispersed
Blo13g00498 Blo-Chr13:26263782 Blo08g00258 Blo-Chr8:3287388 5.68E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g179 . . . . . Bpe12g00127 . . Cmo19g00757 Cmo11g01750 . . . . . Cpe04g00602 Cpe15g00601 Bhi05g01695 Tan02g0667 . . Hepe02g0415 . . Cla02g00415 Cam02g0425 Cec02g0423 Cco02g0441 Clacu02g0426 Cmu02g0421 Cre02g0755 . . . . . Csa07g00112 . Cme01g01250 . Blo13g00498 Bda15g01028 . . . . Bma08g00613 . . . Cma11g01368 . . Car19g00576 . . . . . . . . . . . . . . . . . . Chy01g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00498 Blo_Chr13 FPKM 0.809962 0.0 0.0 1.088657 0.218703 0.0 0.237134 0.0 0.0 0.39718