Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00501 ATGATCGAGGACGGTTGTGCGGACACTGTGATTCCCTTGTTGAACGTGAATAGCACAATCCTAGCTAATATTATTGACTACTGTAAGAAACACGCTGAGTTTGTTTCTGAAAACGCAGACAAGGATTCCAAGATGGTCGATCAGAATCTTAAAGCATGGGACGTTGAGTTCGTCAAGGTTGATCAGGACACCCTCTTTGATCTCATTCTGGTATTTTTCATGCTGGTAATTATCTGGATGAACATCAAGAGCTTGCTGGATCTTACTTGTCAAACTGTGGCTGATATGATAAAGGGAAAAACTCCCGAGGAAATTAGGAAGAAGACATTCAACGTCAAGAATGACTTTACTCCCGAAGAGGAAGAAGAAGTGCGAAAGGAGAACCCATGGGCATTCGAATGA 402 42.29 MIEDGCADTVIPLLNVNSTILANIIDYCKKHAEFVSENADKDSKMVDQNLKAWDVEFVKVDQDTLFDLILVFFMLVIIWMNIKSLLDLTCQTVADMIKGKTPEEIRKKTFNVKNDFTPEEEEEVRKENPWAFE 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26333179 26334279 - BLOR05782 Blo13g00501 68896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00501 133 SUPERFAMILY Skp1 dimerisation domain-like 50 131 IPR036296 GO:0006511
Blo13g00501 133 Pfam Skp1 family, dimerisation domain 83 131 IPR016072 GO:0006511
Blo13g00501 133 PANTHER SKP1 1 133 IPR016897 GO:0006511
Blo13g00501 133 PIRSF SCF_Skp 1 133 IPR016897 GO:0006511
Blo13g00501 133 SMART skp1_3 1 77 IPR001232 GO:0006511
Blo13g00501 133 Gene3D Potassium Channel Kv1.1; Chain A 1 133 IPR011333 -
Blo13g00501 133 Pfam Skp1 family, tetramerisation domain 1 32 IPR016073 GO:0006511
Blo13g00501 133 SUPERFAMILY POZ domain 1 32 IPR011333 -
Blo13g00501 133 PANTHER PUTATIVE-RELATED 1 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00501 K03094 SKP1, CBF3D; S-phase kinase-associated protein 1 - csv:101209382 176.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00658 Blo-Chr10:20731977 Blo13g00501 Blo-Chr13:26333179 4.26E-43 dispersed
Blo12g00878 Blo-Chr12:26978764 Blo13g00501 Blo-Chr13:26333179 6.18E-43 dispersed
Blo13g00501 Blo-Chr13:26333179 Blo15g00043 Blo-Chr15:344165 7.72E-19 dispersed
Blo13g00501 Blo-Chr13:26333179 Blo04g00571 Blo-Chr4:4921476 7.44E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033970 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00501 Blo_Chr13 FPKM 4.829684 5.302279 6.334116 5.814618 6.306256 6.026648 6.421437 2.265725 1.95752 2.469473