Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00505 ATGGAAACACGGAGCCGTAAGCGGGCGGAGGCTACCTCAGCAGCCCCTTCTTCTTCTTCGTCTGTTCCCACTACCCGTTCAAACAAACGGTCTCGTCTTTCTGCTACTTCGTCCTCACATTCCAAACAATCTGCCCCGGCTGCTTCATCAATTTCTACTAGGTCCCGTACTTCAAGATTTCAAGAACCAACTGCTGCTGCTACTCCAATGGACTCGACTAATGAATCATCTGGGTCTCGACGGCGGGGGAGAAACTCCGATAAGGATAATTCGGATAAGGGCAAGGAGAAAGAGCATGAGGTTGGAGTTAGGGATAGAGAAAGGGATATTGAGCGAAGCTTAGGATTGAATATTGAAGGTGGTGCTGGTGGAGATGATGATGATAACGACAGTGAGATGGGGGTTGGAATTTTGCACCAGAATTTGACTTCAGCAAGTAGTGCCCTTCATGGGCTTCTTAGGAAGTTGGGGGCGGGTTTGGATGACTTGTTGCCTTCCTCCGCTATTGGGTCTGCTTCAAGTTCCCAACAGAGCGGCCGGCTCAAGAAGATCCTTGCGGGGTTGAGAGCAGATGGGGAAGAAGGTAGGCAGGTGGAGGCACTGACACAACTTTGTGAGATGCTTTCGATTGGGACTGAGGAATCACTGAGTACATTTTCTGTTGATTCTTTTGTTCCTGTCCTGGTGGGGTTGCTTAATCACGAGAGCAATCCTGATATCATGCTCCTGGCCGCCAGGGCACTAACTCATCTTTGTGATGTGCTTCCTTCATCTTGCGCTGCGGTTGTGCATTATGGTGCAGTTTCATGCTTCTGTGCGAGGTTGTTGACAATAGAGTACATGGACTTGGCCGAACAGTCATTGCAGGCTCTAAAGAAGATATCACAGGAACACCCAACTGCCTGTCTGCGAGCTGGTGCTCTAATGGCTGTGCTTTCTTATCTGGATTTCTTCTCCACTGGAGTTCAGAGAGTAGCATTATCTACTGCTGCAAACATGTGTAAAAAGCTTTCTTCAGATGCAGCTGACTTTGTTATGGAAGCTGTTCCGCTGTTGACTAACCTTCTGCAGTATCATGATTCAAAGGTGTTGGAGCATGCTTCAGTCTGTTTGACTCGGATTGCTGAAGCATTTGCATCATCTACTGATAAATTAGATGAATTGTGTAATCATGGACTAGTGGCGCAAGCTGCCTCACTTATATCTGCCAGCAATTCTGGAGGTGGTCAGGCATCTCTCAGCATACCTACTTATACGGGATTAATTAGACTTCTTTCCACCTGTGCAAGTGGGTCCCCATTAGGGACTAAAACGCTTCTTCTTCTTGGCATCAGTGGTATTCTCAAAGGTATTCTTTCTGGTTCTGGCACAGCTGCAAATGTATCTGTTTCACCTGCTTTAAGTAGACCGCCAGAGCAGGGATTGAGAATAAAAGTAATGACTTTCAATATTATTTTTGAAATTGTCAATCTAGCAAATGAGCTTCTACCACCACTACCCCAAGGAACCATATCCCTTCCTGCAAGTTTTTTGTTTGTGAAAGGATCTGCTATGAAAAAGTCTTCTGCTAGTGGTTCTGGGAAACAAGAAGAAACAAATTGTTCAAATCCTGAGGTCTCAGCTCGTGAAAAACTCTTAAATGATCAACCTGAGCTTCTTCAGCAATTTGGAATGGATCTTCTTCCAATTTTAATACAGATCTACGGGTCAAGTGTCAATGGGCCTGTTCGCCACAAATGTCTCTCAGTTATTGGGAAATTGATGTACTTCAGTTCTTCAGAGATGATCCAATCTCTATTAAATGTAACAAATATATCAAGTTTTTTAGCTGGTGTTTTAGCATGGAAAGATCCTCATGTCTTGATTCCTGCTCTTCAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGAAACTTTTGCAAAGATGTTTGTTAGAGAAGGAGTGGTCCATGCAGTGGACCAACTTGTCTTAGTTAATAATCAAAATAATACTCCTACTCAAGTATCTTCCACTGAGAAAGATAATGATCCTGGAACTGGAACATCATCTCGTACTCGGCGTTATAGACGTCGTAACAGTAATGCAAATCCAGATGGAAGTATATTGGATGAGTCTAAGAATAGTTCTGGAAATGTTGGTTCACCTCCAAGCTCAATAGAAGTTCCATCTGTTAATTCCAATATTCGGTTAGCGGTTAGTGGTTGTGCTACCGCATTCAAGGACAAGTACTTCCCTTCAGATCCTGGAACCACCGAAGTTGGAGGGACTGATGATCTTTTGCATTTGAAGAATCTTTGTAGGAAGTTGAATTTAGGTATTGATGACCAACGCACAAAAGCAACCGGGAAGTCAAAAGCCTTTGAGTCTCACTTGTTTGATAACTCTACGAATAAGGAAGAATACCTATCTGGTGTTATATCAGAGATGCTAGTTGAACTTGGCAAAGGGGACGGTGTATCCACTTTTGAGTTTATTGGAAGTGGTGTTGCTGCAGCTTTGCTGAATTATTTTTCTTGTGGATACTTTTTGAAGGAGAAAATTTCAGAAGCCAATCTGCCAAAGCTTCGTCAGCAGGCACTTAAAAGATTCAAATCATTTGTTGCTGTAGCACTTCCTTCCGATGCTTCTGAGGGTACTTTGGCTCCTATGGCTGTTTTGGTTCAGAAACTTCAAAATGCTTTATCCTCCTTGGAGCGTTTCCCGGTTGTCTTAAGGCAGTCATCTAGGTCATCTAGTGGAAGTGGTCGTCTTTCCTCTGGATTAAGTGCATTATCTCAACCTTTTAAGTTGCGTCTGTGTCGAGCTCACGGAGAGAAAAATCTCCGTGATTATTCTTCAAATGTTGTGCTCATTGATCCCTTAGCCAGTTTAGCAGCTGTTGAAGAGTTTCTTTGGCCTCGTGTACAGCGAGGTGATACTGGTCAAGAGCCTGCATTATCTACTGGAAATTCAGAGTTGGGAACCACTTCTGGAGTTGCTGGTTCATCTCCATCCACAACCACTCCTGCTTCAGCGACTCGTCGTCACTCTACTAGGTCGAGATCCTCAGTGAACATAGGAGATGGAGCTAAGAAGGAATTATCTGAAGAGAAAAGCACAAGTTCATCTAAAGGAAAAGGTAAGGCTGTTATGAAGCCTGCTCAGGAGGAAGCAAGAGGGCCTCAAACTAGGAATTCTTCTCGTAGGAAAGCAGCTATAGACAAGGATGCTCGGAAACCAGTTAATGGGGAGACTTCGTCTGAGGACGAGGAATTGGATGCATCTTTTGTTGAGATTGATGATGCATTAGTTATTGAAGATGATGATATCTCAGATGACGAAGATGATGATCATGATGAGGTCCTAAGAGCTGAGTCCCTTCCTGTTTGTATACCTGAAAGAGTACATGACGTTAAGTTGGGTGATGCAGCTGAGGAAAGTAATGTTGCTCCAGTAACTGCTGATAGCCATGTCAACCCTGCTTCCGGTTCAAGTAGCAGAATTGCTACAGTTAGGGGCTCAGATTCTAATGATCATAGGAGTAGCAATTCTTATGGTTCACGGGGTGCAATGTCATTTGCCGCTGCTGCTATGGCTGGGCTTCGATCTGGTAATGGTAGAGGTTTTAGAGGAGGTCGAGACAGGCATGGTCGTCCTCTCTTTGGTAGCTCTAATGATCCGCCAAAGTTGGTTTTTACTTCTGGTGGGAAGCAGCTTAATAGGCATTTAACCATTTACCAGGCTATCCAGAGACAACTTGTTTTGGATGAGGATGACGATGAGAGATATGCTGGTAGTGATTTCTTGTCTAGTGATGGAAGTAGGCTATGGAGTGACATATATACTATTACATACCATAAAGCTGAAAATCAAGCAGATAGAATGTCTACTGGGGGATCCAATACTTCTGCTGCCTCAAAATCTACCAAATCTGGTTCTGCTTCCAATTCTAACTCTAATTTGCAGAGGGTGTCACTTCTAGATAGCATTTTGCAGGCGGAGCTTCCTTGTGATATGGAAAAGTCTAATCCTACTCATAGTATATTGGCATTGTTGCGTGTTTTAGACACTTTGAACCAACTTGCACCTCGTTTGAGAGCGCAGATAGTTTCTGATCGTTTTGCAGAGGGTAAACTCTTCAGTCTTGATGAGCTAAGTGCTGCTGGCGCAAGGGTCCTTCCTGATGAGTTCATTAATAGCAAGCTTACTCCTAAATTAGCGCGACAAATTCAAGATGTCCTTGCATTATGCAGCGGAAGTCTCCCTTCATGGTGTTATCAGTTGACGAAAGCTTGTCCATTTTTGTTTCCTTTTGAAACCCGGCGACAATATTTCTATTCAACTGCTTTTGGGTTATCACGTGCTTTGTATCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCTTGGAATGGGAAGTGAAAGAGAGGTGAGGGTTGGGAGGTTACAGCGCCAAAAAGTTCGTGTGTCTAGAAACCGTATTTTAGATTCTGCAGTGCAAGTAATGGAAATGTATTCTAGTCAAAAGGTAATGCTGGAAGTAGAGTATTTTGGTGAAGTTGGAACTGGGTTGGGCCCTACACTTGAGTTTTATACACTTATAAGTCATGACCTACAAAAAGCTACTCTTGGAATGTGGAGATCAAATTCCTCGTCTGATAGATCTATGGAAATTGATGGGGATGAACTGAAAGATGAAAAAATCAACTCTGCTGGATTTGGTTCCATGGTAAGCAATTCAGACTCCATACATGCTCCGCTTGGATTGTTCCCTCGCCCCTGGTCTCCAAATTCGGATGTTTCAAATGGTAGCCAATTTTCTAAAGTAATAGAGTATTTCCGATTAGTTGGTCGTGTGATGGCCAAAGCACTTCAGGATGGGCGATTATTGGACCTACCACTGTCAACAGCATTCTATAAGCTGGTGCTTGGTCAAGAGCTCGATTTGCATGATATTCTTTCATTTGATACTGAATTTGGCAAGATTTTGCGAGAGTTGCATGTACTTGTTTGTCGGAAACAATACCTAGAATCACCAGGTGGTGATAATCATGAAGCAATTGTCAACTTGCGTTTTCGCGGGACTTCAATTGAGGACCTGTACTTGGATTTTTCACTTCCCGGTTACCCAGATTACATTTTGAAGCAAGGAGATGAAAATGTCAATATCAACAACCTGGAGGAGTACGTGTCCTTGGTAGTTGATGCAACCGTCAAGACTGGAATCATGCGCCAAATTGAAGCATTTAGAGAAGGATTTAACCAGGTCTTTGACATCTCTTCGTTGCAAGTATTTACTCCAAATGAGCTAGATAATTTGCTTTGTGGTCGGCGAGAGTTATGGGAGGCCGACACCCTTGCTGATCACATAAAATTTGATCATGGCTACACTGCAAAGAGCCCTGCCATAGTAAATTTACTCGAGATCATGGGAGAGTTCACTCCTGAGCAGCAGCGAGCCTTTTGCCAGTTTGTTACTGGTGCACCTCGGCTTCCTCCTGGTGGGTTGGCTGTTCTGAACCCAAAACTTACAATCGTGAGAAAGCATTCTTCAACCGCTACTAATGTTACAACTAATGGAACTGGGTTGTCCGAATTAGCAGATGATGACTTGCCTAGTGTTATGACTTGTGCCAATTACCTGAAGCTTCCTCCTTACTCAACTAAGGAGGTGAATGGGATTGAAATTTATTCAGGAGGGGATGCTTGGTTGCGGAGAACTTGTAAAAGGATCAAATGTCATATAGATAATGTGCTTGGGAGTGTTGGGTCATTGACGATAGATGTCTTGAACAATTGTTTTTTAATATTTTGTTTGTACATGAAATTAATGAGTGAAGGCAAGCACGACATATGTAGTTTTGCTCATGATACGTTGGGTATTAGGATTAATGTTATTAATGTGAAGGAGAAAACATTGCCAGATGAACTCTTGGGTTATCAGCTGGAAGATGCTGGAAAAGATGTTCAACCGAAAGAAATTGAACATCGCTATGCAATTTTAAGTCACATGTACGAGGTCCTCAACAACTCGTTCAAGAGTCTATCATTTAATTGGCTCGTTCAGAGGATTGTTGAGCATAACGGGATACTGGTCTCGAATGAGGAGCCAAGAATTGAAGAGAAGGCCGCTGACGTCTACAACAAATTGAAAGTGGACCGCATGGGGATCTCCAAAGTCGGAGGGGAATGGATATGCAAAACTCCATCCAAGCCCGCCTTGAAGACTTGA 6207 43.31 METRSRKRAEATSAAPSSSSSVPTTRSNKRSRLSATSSSHSKQSAPAASSISTRSRTSRFQEPTAAATPMDSTNESSGSRRRGRNSDKDNSDKGKEKEHEVGVRDRERDIERSLGLNIEGGAGGDDDDNDSEMGVGILHQNLTSASSALHGLLRKLGAGLDDLLPSSAIGSASSSQQSGRLKKILAGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLSSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSTDKLDELCNHGLVAQAASLISASNSGGGQASLSIPTYTGLIRLLSTCASGSPLGTKTLLLLGISGILKGILSGSGTAANVSVSPALSRPPEQGLRIKVMTFNIIFEIVNLANELLPPLPQGTISLPASFLFVKGSAMKKSSASGSGKQEETNCSNPEVSAREKLLNDQPELLQQFGMDLLPILIQIYGSSVNGPVRHKCLSVIGKLMYFSSSEMIQSLLNVTNISSFLAGVLAWKDPHVLIPALQIAEILMEKLPETFAKMFVREGVVHAVDQLVLVNNQNNTPTQVSSTEKDNDPGTGTSSRTRRYRRRNSNANPDGSILDESKNSSGNVGSPPSSIEVPSVNSNIRLAVSGCATAFKDKYFPSDPGTTEVGGTDDLLHLKNLCRKLNLGIDDQRTKATGKSKAFESHLFDNSTNKEEYLSGVISEMLVELGKGDGVSTFEFIGSGVAAALLNYFSCGYFLKEKISEANLPKLRQQALKRFKSFVAVALPSDASEGTLAPMAVLVQKLQNALSSLERFPVVLRQSSRSSSGSGRLSSGLSALSQPFKLRLCRAHGEKNLRDYSSNVVLIDPLASLAAVEEFLWPRVQRGDTGQEPALSTGNSELGTTSGVAGSSPSTTTPASATRRHSTRSRSSVNIGDGAKKELSEEKSTSSSKGKGKAVMKPAQEEARGPQTRNSSRRKAAIDKDARKPVNGETSSEDEELDASFVEIDDALVIEDDDISDDEDDDHDEVLRAESLPVCIPERVHDVKLGDAAEESNVAPVTADSHVNPASGSSSRIATVRGSDSNDHRSSNSYGSRGAMSFAAAAMAGLRSGNGRGFRGGRDRHGRPLFGSSNDPPKLVFTSGGKQLNRHLTIYQAIQRQLVLDEDDDERYAGSDFLSSDGSRLWSDIYTITYHKAENQADRMSTGGSNTSAASKSTKSGSASNSNSNLQRVSLLDSILQAELPCDMEKSNPTHSILALLRVLDTLNQLAPRLRAQIVSDRFAEGKLFSLDELSAAGARVLPDEFINSKLTPKLARQIQDVLALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGLGMGSEREVRVGRLQRQKVRVSRNRILDSAVQVMEMYSSQKVMLEVEYFGEVGTGLGPTLEFYTLISHDLQKATLGMWRSNSSSDRSMEIDGDELKDEKINSAGFGSMVSNSDSIHAPLGLFPRPWSPNSDVSNGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQELDLHDILSFDTEFGKILRELHVLVCRKQYLESPGGDNHEAIVNLRFRGTSIEDLYLDFSLPGYPDYILKQGDENVNINNLEEYVSLVVDATVKTGIMRQIEAFREGFNQVFDISSLQVFTPNELDNLLCGRRELWEADTLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTATNVTTNGTGLSELADDDLPSVMTCANYLKLPPYSTKEVNGIEIYSGGDAWLRRTCKRIKCHIDNVLGSVGSLTIDVLNNCFLIFCLYMKLMSEGKHDICSFAHDTLGIRINVINVKEKTLPDELLGYQLEDAGKDVQPKEIEHRYAILSHMYEVLNNSFKSLSFNWLVQRIVEHNGILVSNEEPRIEEKAADVYNKLKVDRMGISKVGGEWICKTPSKPALKT 2068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26382024 26394906 - BLOR05786 Blo13g00505 68900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00505 2068 SMART hect_3 1490 1887 IPR000569 GO:0004842
Blo13g00505 2068 MobiDBLite consensus disorder prediction 1197 1222 - -
Blo13g00505 2068 Gene3D Hect, E3 ligase catalytic domains 1417 1664 - -
Blo13g00505 2068 Gene3D - 169 473 IPR011989 -
Blo13g00505 2068 ProSiteProfiles HECT domain profile. 1500 1883 IPR000569 GO:0004842
Blo13g00505 2068 MobiDBLite consensus disorder prediction 660 722 - -
Blo13g00505 2068 SMART arm_5 338 376 IPR000225 GO:0005515
Blo13g00505 2068 SMART arm_5 295 335 IPR000225 GO:0005515
Blo13g00505 2068 SMART arm_5 212 253 IPR000225 GO:0005515
Blo13g00505 2068 Pfam HECT-domain (ubiquitin-transferase) 1525 1883 IPR000569 GO:0004842
Blo13g00505 2068 SUPERFAMILY ARM repeat 180 656 IPR016024 -
Blo13g00505 2068 MobiDBLite consensus disorder prediction 694 722 - -
Blo13g00505 2068 MobiDBLite consensus disorder prediction 660 682 - -
Blo13g00505 2068 MobiDBLite consensus disorder prediction 974 1018 - -
Blo13g00505 2068 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 44 1883 IPR045322 GO:0006511|GO:0061630
Blo13g00505 2068 Gene3D Hect, E3 ligase catalytic domain 1773 1885 - -
Blo13g00505 2068 MobiDBLite consensus disorder prediction 1285 1312 - -
Blo13g00505 2068 MobiDBLite consensus disorder prediction 1 133 - -
Blo13g00505 2068 MobiDBLite consensus disorder prediction 77 114 - -
Blo13g00505 2068 MobiDBLite consensus disorder prediction 1147 1179 - -
Blo13g00505 2068 SUPERFAMILY Hect, E3 ligase catalytic domain 1470 1883 IPR035983 GO:0004842
Blo13g00505 2068 MobiDBLite consensus disorder prediction 1055 1079 - -
Blo13g00505 2068 MobiDBLite consensus disorder prediction 971 1086 - -
Blo13g00505 2068 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 44 1883 - -
Blo13g00505 2068 CDD HECTc 1477 1883 IPR000569 GO:0004842
Blo13g00505 2068 MobiDBLite consensus disorder prediction 10 76 - -
Blo13g00505 2068 Gene3D - 540 665 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00505 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - zju:107427509 2726.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00566 Blo13g00505 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00457 Blo-Chr12:22133149 Blo13g00505 Blo-Chr13:26382024 1.17E-20 dispersed
Blo13g00505 Blo-Chr13:26382024 Blo03g00217 Blo-Chr3:4926281 5.72E-27 dispersed
Blo13g00505 Blo-Chr13:26382024 Blo04g00566 Blo-Chr4:4867342 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00505 Blo_Chr13 FPKM 0.960485 0.711615 9.892559 9.353734 9.444267 7.990293 9.139863 1.081877 1.01066 1.478079