Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00520 ATGGTGTTCCTCTGCAATGCCCCCAAAATCTCCTCCGCATTTCGTATACGGCCTAAGAGACGCAAACTTTCCAAGCTCCCCTGCGTGGGGAAGGCCCTCCTCAGCCTCGCTTCCAGAGGTAATCTCTCAAGTGCTCTCTCTCATCTGGACTTATTAGCGAGCAAAGGTATTCGGTTGCCCTTTCGAGTGATTGCTCAACTCTTGCAACGCTGCGGCAACGCGAGATCTCTTAGAGAAGGGACATGGATTCACCTTCATCTGAAACTTACGGGGTTCAAACACCCTACAATTTTTATATCCAACAATTTGATTAATATGTATTTTAGTTGCGGAAACGACGCACAGGCACGCAAGGTGTTCGATAAAATGGCTGCTAAAAACTTGTATTCTTGGAACAATATGCTTTCTGGGTATGCGAAATTGGGGAGAATAAAACCAGCGAGGAAGTTATTTGATCAAATGCCAGAAAAGGACGTTGTTTCGTGGAATACGATGGTGATTGCCCATGCAAAAATGGGGCACTATCACGAGGCTTTAAGACTTTATAGCGAGTTTCGAAGAAAATCAATTGGATTTAACGCGTTCAGTTTTGCTGGTGTTTTAACTCTTTGTGTAAAGTTCAAGGCTTTTCAGCTTACTAGACAAGTTCATGGGCAGGTATTGGTTGCTGGTTTCTGGTCTAATGTAGTACTTTTGAGTTCAATTCTCGATGCTTATGCAAAATGCGAGAAGATGGAAGAGGCAAAGAGATTATTTGACAACATGCCTGTGAGGGACGTCCTTGCTTGGACCACCATGGTCTCTGCCAATGCTAAATTTGGTGACATGGAATCTGCAAGTAAATTGTTCGATCAAATGCCTGAAAAGAACTCTGTCTCATGGACAGCTTTGATAGCAGGCTATGCTAGAAACTGTTTGGGGCATGAAGCCCTCGAATTGTTTACGGAAATGATGATTTTACGGATCATACCTGACCAATATACATTCAGTAGTTGCCTCTGTGCTTGTGCGACAATATCTGCACTGAAGCATGGAAAACAAATCCATGGATATTTGACAAGAACTAACTTTAACTCCAACACAATAGTTGTTAGCTCTCTAATTGACATGTATTCAAAATGTGGGAGCGTAGAAGCTGGCTGGCAAATTTTCTGTCTCACCAGCTGCAAGCACGATGCCGTTCTATGGAATACAATGATGTCTGCTCTAGGGCAGCATGGCCATGGTAAAAGCGCTATTCAGCTGTTCAATAACATGGTGAAATCAGGGGTGAAGCCTGACAGAATCACCTTCATCGTAATGCTTAGTGGGTGTAGTCATGCAGGGATGGTACAAGATGGTCTAATGTTTTTCAAATCAATGGGTAGCAATCTTGGCGTTTTTCCAGATCAAGAACATTATGCTTGCTTAATTGACCTTTTGGGTCGAGGTGGATATTTCATCGAACTGATGAATCATCTGGAGAGGATGTCTTGTAAGCCTGATGATCGTGTGTGTAACGCCTTACTGGGTGTCTGCGGAATTCATGGGAATATCGAGCTGGGAAAGAAAGTGGCTGAACACATCATTAATCTGCAGCCAGAATCCTCCTCAGCTTATGTGTTACTTGCTGGTATGTACGCTACTCATGGGCGGTGGGAGTCAATGGAGAAAGTAAGAGAAGTTATGAATGATAGATATGTGAAAAAAGAGCGTGCTATTAGTTGGATAGAAATTGAAAATAAAGTACATTCTTTCATTGTTTCGGATAGACTGCACCCATTGATAGAAGATATATACAATATTCTGAAGCAGATTGCTGGGCATATGGAACAGAATGTCTCAATCTCTTACTGA 1836 42.59 MVFLCNAPKISSAFRIRPKRRKLSKLPCVGKALLSLASRGNLSSALSHLDLLASKGIRLPFRVIAQLLQRCGNARSLREGTWIHLHLKLTGFKHPTIFISNNLINMYFSCGNDAQARKVFDKMAAKNLYSWNNMLSGYAKLGRIKPARKLFDQMPEKDVVSWNTMVIAHAKMGHYHEALRLYSEFRRKSIGFNAFSFAGVLTLCVKFKAFQLTRQVHGQVLVAGFWSNVVLLSSILDAYAKCEKMEEAKRLFDNMPVRDVLAWTTMVSANAKFGDMESASKLFDQMPEKNSVSWTALIAGYARNCLGHEALELFTEMMILRIIPDQYTFSSCLCACATISALKHGKQIHGYLTRTNFNSNTIVVSSLIDMYSKCGSVEAGWQIFCLTSCKHDAVLWNTMMSALGQHGHGKSAIQLFNNMVKSGVKPDRITFIVMLSGCSHAGMVQDGLMFFKSMGSNLGVFPDQEHYACLIDLLGRGGYFIELMNHLERMSCKPDDRVCNALLGVCGIHGNIELGKKVAEHIINLQPESSSAYVLLAGMYATHGRWESMEKVREVMNDRYVKKERAISWIEIENKVHSFIVSDRLHPLIEDIYNILKQIAGHMEQNVSISY 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26746045 26747880 - BLOR05801 Blo13g00520 68915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00520 611 Gene3D Tetratricopeptide repeat domain 457 586 IPR011990 GO:0005515
Blo13g00520 611 Pfam PPR repeat 364 385 IPR002885 -
Blo13g00520 611 Pfam PPR repeat 101 127 IPR002885 -
Blo13g00520 611 Pfam PPR repeat 233 258 IPR002885 -
Blo13g00520 611 PANTHER - 32 286 - -
Blo13g00520 611 PANTHER - 289 605 - -
Blo13g00520 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Blo13g00520 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Blo13g00520 611 Pfam E motif 509 571 IPR046848 -
Blo13g00520 611 SUPERFAMILY TPR-like 92 297 IPR011990 GO:0005515
Blo13g00520 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Blo13g00520 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Blo13g00520 611 Gene3D Tetratricopeptide repeat domain 29 176 IPR011990 GO:0005515
Blo13g00520 611 Gene3D Tetratricopeptide repeat domain 306 456 IPR011990 GO:0005515
Blo13g00520 611 Gene3D Tetratricopeptide repeat domain 199 289 IPR011990 GO:0005515
Blo13g00520 611 PANTHER BNACNNG07920D PROTEIN 32 286 - -
Blo13g00520 611 PANTHER BNACNNG07920D PROTEIN 289 605 - -
Blo13g00520 611 PANTHER BNACNNG07920D PROTEIN 266 337 - -
Blo13g00520 611 PANTHER - 266 337 - -
Blo13g00520 611 TIGRFAM PPR: pentatricopeptide repeat domain 429 463 IPR002885 -
Blo13g00520 611 TIGRFAM PPR: pentatricopeptide repeat domain 233 259 IPR002885 -
Blo13g00520 611 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Blo13g00520 611 TIGRFAM PPR: pentatricopeptide repeat domain 160 190 IPR002885 -
Blo13g00520 611 TIGRFAM PPR: pentatricopeptide repeat domain 394 427 IPR002885 -
Blo13g00520 611 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Blo13g00520 611 Pfam PPR repeat family 157 204 IPR002885 -
Blo13g00520 611 Pfam PPR repeat family 289 337 IPR002885 -
Blo13g00520 611 Pfam PPR repeat family 392 439 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00520 - - - qsu:112017763 833.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00520 Blo-Chr13:26746045 Blo05g00612 Blo-Chr5:17006152 1.91E-123 dispersed
Blo13g00520 Blo-Chr13:26746045 Blo17g00755 Blo-Chr17:23969099 6.06E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g130 . . . . . Bpe12g00113 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1222 Cone8ag1274 . . . . . . . Blo13g00520 Bda15g01042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008158 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00520 Blo_Chr13 FPKM 1.379043 1.36125 7.98244 7.964455 11.279503 11.755471 11.057845 10.633858 10.021446 10.791778