Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00521 ATGGAAACTGGAGTTGAAATTGTCGATGGCTTGCCAGTGGAAGAGACAAAGAGTCTGAATGCTCCTGAGGAGAGGGTGGAGGAGAGAGTTGTCTCTGAGGATGCAGTGAATGCAGAAGAGCATTTTCTGGAACAGAGGATGAAATCTGACTCTGCAGACAGTGTTGTTCATGAAGTAGTAGAGGAGGAACCGGTTGGGGATTCTGAAGCTGGCGTGGCTTTGGAGAGTCCTTACTTTTCTAATGCGGTTGATAAATTTGACGCAGTAATTGAAGCTTTAAATTTGGCAGGGGAAAATAAGGAGGAGGTCCATAATGAAGAGGAACCCACCTTAATTGCCATGAAGGGGAAAGATGTGGATGGTGGAAGTTCTGTTTTAGAGCCCATAGTGACAAGTATAGTTGATGAGGAAGTCCCCGAGAAGGACGAAAAGTCTGAGCTCAATGAGTCACACAATGGATTAGGTAGGAGCGAAGATTGGGGAAAAGAGTTTTCTGAAACAGCCGCTAGGAATGAGAGTGAAAGTTTGGATGATGTGGATAAGATTGAGGATGTTAAATCTGGTGTAGCGATTGAGGAGCCAGCAACAATGGGTGAGACTATAAATAGTATGAATGTAGGCATTGAGTCTAACAGTGAGATTATTATTGATCAAAGTGATAATGTAAATGATGCGGGCAAAAGCAAAGCGACTTTGGAACGTTACGAAGAACCAACAGGCGAGTTAAGAAATGGCAAGAGTGGCCATCATCTAGAGCTTCTAGGCAATAAAAATGCAAAACTCAGTGTTAACTATAATCTTACTGACATTGATGTAAAATTCCCAGATAAAGAAAGAGAGGAACTTGGAGATTCCATTGCCCGTTCTGGTTCAAGGTATGAAGGTGAAGATTTAAGTTACAATTACAATGTCAAGGAAATGGACAATGCTTCAGTTGTGGTAGATTCAGGGCATAATGGACACGCAAGTGACTCGAGAGTGGATTTAGACCATAATGGGGAAACGCATGGAAAAAAAAATAGTTCAGCTGATCTGCATAAAATTTTGAATGATTGGGAAGATGAGGCCCAAAATGGAACTCAGTCTCCTGTGAAGGTAAAGGATGAAAAAATAGCTAAGATTCAGGATGGTAAAACTGGTTTGATTGCGATGGATAACCAACTTGACAAAAGTCAGCAACTTGATGATTATGGCAAACATAATATTGGCATTGAGAAAGTTGAAAAGGCAGAGGGTAAGGTTCTGGAAGAAAATAAGGGCACTCGCCCAAATACAGATGCAGGAATCCAACCTTCACCTCCTTTACCTTCATCATCTGAAAAAGTTCCAAATCCTGCTCCCTTTCCTGCTTGTCCTGCTGGCCTTGGGCGTGCTGCTCCATTATTAGAGCCCGCACCAAGGACTGCCCAACAGCCTCGAGTAAATGGTACTGTTTCGCATATGCAGACTCAACAAATTGAGGACTCTTCTAATGGAGAGGATGTGGAGATTGATGAGACTCGTGAAAAGCTCCAAATGATAAGGGTGAAATTTCTGCGTCTTGCATATAGGCTTGGTCAGACTCCACATAATGTCGTTGTTGCACAGGTTTTATATCGTCTGGGTTTAGCCGAGCAATTGCGAGGAAGAAATGGAGGCCGGGTTGGTGCCTTCAGTTTTGATCGTGCCAGTGCCATGGCAGAGCAGCTTGAGGCAGCTGGGCAAGAGCCACCTGATTTTTCTTGTACAATTATGGTTTTGGGAAAGACAGGCGTTGGCAAAAGTGCAACTATCAATTCCATTTTTGATGAAGTTAAGTTCAGCACGGATGCTTTTCAAATGGGTACAAAGAAAGTTCAGGATGTTGTGGGTACTGTGCAGGGTATTAAGGTGCGCGTTATTGACACACCAGGCCTTCTGATCTCATGGTCTGATCAGCGCCAGAATGAAAAGATTCTCCTTTCTGTTAAACGCTTTATCAAGAAAACACCTCCGGATATTGTATTGTATCTTGACAGGTTGGACGTGCAAAACCGGGATTTTAGTGACGTGCCACTCTTGCGAACCATCACTGAAATATTTGGGCCGTCCATTTGGTTTAATGCAATCGTGGTTTTCACTCATGCAGCCTCAGCTCCACCTGATGGCCCTAATGGTACAGCTTCTAGCTATGATATGTTTGTTACTCAACGCACTCATGTTGTCCAGCAAGCTATTCGTCAGGCAGCTGGGGATATGCGGCTCATGAACTCTGTGTCACTGGTGGAGAACCACTCCGCATGCAGAACAAACAGAGCTGGGCAAAGAGTTTTGCCAAATGGTCAGGTATGGAAGCCTCATTTGTTGCTTCTGTCTTTTGCATCAAAGATTCTGGCCGAAGCAAATGCACTGTTGAAGCTTCAAGACAGTCCTCCTGGACGGCCTTTCACAGCTCGATCAAGGGCTCCTCCTTTACCGTTTCTGCTATCATCCCTACTTCAATCAAGACCATTGGTGAAACTTCCTGAGGAGCTGTTTGTCAACGGGGATGATCTTGAGGACGAAATTGATGGATCCTCAGATTCTGAAGGCGGATCAGAATACGAGGAGCTGCCACCATTTAAACGATTGATGAAGGCTGAAGTTGCTAAACTTTCCAAGGAACAAAAGAAGGCATATTTTGACGAATTAGAATATAGGGAAAAGCTGTTTATGAAGAAACAACTAAAAGAAGAAAAAAGCCGGCAAAGAATGATGAAGAAAATGGCAGCTCAGATGAAGGATCTGCCAACTGACTACGCTGAGAATATAGAAGAAGAAAGTAATGGTGCAGCCTCAGTACCAGTTCCCATGCCAGATTTAGCACTACCTGCTTCATTTGATTCTGATAATCCTACTCATCGATATCGTTATCTTGATTCGTCTAACCAATGGCTGATAAGGCCAGTACAAGAAACACATGTTTGGGATCATGATGTTGGTTATGAAGGTATAAATGTAGAAAAACTGTTTGTCTTTAAAGAAAAAATTCCCTTATCCTTTTCGGGTCAGGTTACCAAGGATAAGAAGGATGCTAATGTTCAGATGGAAATGACCAGTTCAATAAAGCATGGAGAAGGGAAAGCAACTTCTTTTGGTTTTGATATGCAGACTGTTGGGAAGGACTTGGCTTATACTTTACGTGCTGAGAGAATATTTTGTAATTTTTGGAAGAATAAGGCTATTGCAGGTATTTCGGCCACTCTCTTGGGTGATACCTTGTCTGCTGGAGTGAAAGTAGAAAACAAATTGATTGCCAGTAAAAGATTCAGATTGGTTATAACTGGAGGTGGAATGGCTAGTAGGGAAGATGTTGCTTATGGAGGCAGTCTTGAGGCCCAATTGAGGGACGAAGATTATCCTTTGGGTCGATCACTATTGACTCTTGGGTTATCTGTTATGGATTGGCATGGAGATCTTGCCATTGGATGCAATATACAGTCCCAAATTCCCGTTGGACGAACAACAACTTTGATCGGTCGGGCCAATTTGAATAATAAAGGAGCTGGGCAAGTAAGCATACGCTTAAACAGCTCAGAACAGCTTCAAATAGCATTGATTGGTCTTGTTCCTCTCGTGAAAAAGATTCTCGGTTATCCTCATCAGTAG 3606 42.98 METGVEIVDGLPVEETKSLNAPEERVEERVVSEDAVNAEEHFLEQRMKSDSADSVVHEVVEEEPVGDSEAGVALESPYFSNAVDKFDAVIEALNLAGENKEEVHNEEEPTLIAMKGKDVDGGSSVLEPIVTSIVDEEVPEKDEKSELNESHNGLGRSEDWGKEFSETAARNESESLDDVDKIEDVKSGVAIEEPATMGETINSMNVGIESNSEIIIDQSDNVNDAGKSKATLERYEEPTGELRNGKSGHHLELLGNKNAKLSVNYNLTDIDVKFPDKEREELGDSIARSGSRYEGEDLSYNYNVKEMDNASVVVDSGHNGHASDSRVDLDHNGETHGKKNSSADLHKILNDWEDEAQNGTQSPVKVKDEKIAKIQDGKTGLIAMDNQLDKSQQLDDYGKHNIGIEKVEKAEGKVLEENKGTRPNTDAGIQPSPPLPSSSEKVPNPAPFPACPAGLGRAAPLLEPAPRTAQQPRVNGTVSHMQTQQIEDSSNGEDVEIDETREKLQMIRVKFLRLAYRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPPDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLISWSDQRQNEKILLSVKRFIKKTPPDIVLYLDRLDVQNRDFSDVPLLRTITEIFGPSIWFNAIVVFTHAASAPPDGPNGTASSYDMFVTQRTHVVQQAIRQAAGDMRLMNSVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGRPFTARSRAPPLPFLLSSLLQSRPLVKLPEELFVNGDDLEDEIDGSSDSEGGSEYEELPPFKRLMKAEVAKLSKEQKKAYFDELEYREKLFMKKQLKEEKSRQRMMKKMAAQMKDLPTDYAENIEEESNGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVQETHVWDHDVGYEGINVEKLFVFKEKIPLSFSGQVTKDKKDANVQMEMTSSIKHGEGKATSFGFDMQTVGKDLAYTLRAERIFCNFWKNKAIAGISATLLGDTLSAGVKVENKLIASKRFRLVITGGGMASREDVAYGGSLEAQLRDEDYPLGRSLLTLGLSVMDWHGDLAIGCNIQSQIPVGRTTTLIGRANLNNKGAGQVSIRLNSSEQLQIALIGLVPLVKKILGYPHQ 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26749672 26753277 + BLOR05802 Blo13g00521 68916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00521 1201 MobiDBLite consensus disorder prediction 18 33 - -
Blo13g00521 1201 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 452 1197 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Blo13g00521 1201 Pfam AIG1 family 575 708 IPR006703 GO:0005525
Blo13g00521 1201 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 429 1199 - -
Blo13g00521 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 709 IPR027417 -
Blo13g00521 1201 MobiDBLite consensus disorder prediction 408 495 - -
Blo13g00521 1201 MobiDBLite consensus disorder prediction 321 341 - -
Blo13g00521 1201 ProSiteProfiles AIG1-type G domain profile. 572 801 IPR006703 GO:0005525
Blo13g00521 1201 MobiDBLite consensus disorder prediction 1 33 - -
Blo13g00521 1201 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 429 1199 IPR045058 -
Blo13g00521 1201 Pfam Translocase of chloroplast 159/132, membrane anchor domain 933 1196 IPR024283 -
Blo13g00521 1201 Gene3D - 543 792 IPR027417 -
Blo13g00521 1201 MobiDBLite consensus disorder prediction 470 490 - -
Blo13g00521 1201 CDD Toc34_like 547 792 - -
Blo13g00521 1201 MobiDBLite consensus disorder prediction 317 341 - -
Blo13g00521 1201 MobiDBLite consensus disorder prediction 436 450 - -
Blo13g00521 1201 MobiDBLite consensus disorder prediction 139 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00521 - - - cmo:103490300 1336.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00558 Blo13g00521 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01289 Blo-Chr1:49527831 Blo13g00521 Blo-Chr13:26749672 7.79E-06 dispersed
Blo05g00312 Blo-Chr5:3510092 Blo13g00521 Blo-Chr13:26749672 0 dispersed
Blo06g00485 Blo-Chr6:26422651 Blo13g00521 Blo-Chr13:26749672 0 dispersed
Blo01g00610 Blo-Chr1:6745735 Blo13g00521 Blo-Chr13:26749672 1.41E-156 transposed
Blo08g00457 Blo-Chr8:9897422 Blo13g00521 Blo-Chr13:26749672 6.49E-34 transposed
Blo16g00886 Blo-Chr16:36514053 Blo13g00521 Blo-Chr13:26749672 1.14E-168 transposed
Blo13g00521 Blo-Chr13:26749672 Blo04g00558 Blo-Chr4:4819538 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00521 Blo_Chr13 FPKM 16.992611 16.650738 19.818165 22.378901 16.860062 12.439331 16.867943 13.178903 11.525503 13.031423