Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00523 ATGGCGGCCAAGGTGTCTCCATGGGGAAAGCCTGGTGCTTGGGCTCTCGATTCGGAAGCGCACGAAGCCGAACTTCTTGCAGAAACTCAACCAAACCAGAACGGCCACCCTACCGCTGATTTTCCCTCTCTAGCCGCCGCGGCCGCCAAACCGAAGAAGAAGAAAGGCCAGACCATACCCTTAGCCGAGTTCACTACCTATGGAGGTCCCAAGCCTCCAGCTGTCTCCACCCAGCCAGCGGGTCTCACCCACGAGGATCTCCTGATTCTCCCCACTGGCCCTCGCGAGAGAACGGCTGAGGAGCTTGAACGGAGTCGGCTCGGCGGTGGGTTCAGGAATTACGGCTCGAATGGTTCTTATGATCGTAGCAATAGATACTCCAATAGTGATGATTCGTCTAATTCGAGATGGGGTTCGTCTAGGGTTTCTGATGAGACGAGGAGGAACAACGGTGGTTTTGGAAAGGAATTTGTGAGGGAAGCGGCTTCGTCTAGGGCTGATGAGATAGACAACTGGACTGCAGGGAAAAGGCCAATTGTGAGTAATGGGTTTGAGAAGAGGGAGAAAGGATGGTTTTCGGATACTCGGTCCTCAAAAGCAGACGAATCTGATAGCTGGGTTTCTGGCAAGAGCTTTATACCTTCGGAGACTCGGAAATTCAGTAGCAATGGGAGTTTTGACAGAGATCGGAGAGGAGGGGGGTTCACCTCTAATGGGGCCGATGTTAATTCAGATAAGTGGGGGAAGAAGGAGGGTATTGCTAGAAGCGTAGGCGAGAGACCGAGGCTTAATTTGCAACCTCGTACAGTGCCTTTAAGCAATGATGGAAAGCCAGAGGATTTGGAGAATGCTGCAAAGCCTAAAGGATCCAATCCGTTCGGAGAGGCGAGGCCAAGAGAGGAGGTTTTGGCGGGAAAGGGACAAGATTGGAAGAAGATTGATGAGCAGTTTGGGTTGATGAAGATCAAGGATGCGGAGAATGCGGAAAAGCTTAATGGAAGTTCTCCTTGGAAAAGAAGTTCCGGCAATGGGAATAGCAGGCTCTCTGAAGATCGAGCTGAGAGAACTTGGAGGAAGCCTGATTCCATAGATACTCGTCCCAAAAGGTGCAGACTAGGCAAGTTAACTCAGTCACCTCCGACTCCACCAAGCATGGGAATTCCTTTTTCACTGACTGTGTGCGTCGTAGAGCTTTTGATTCTCCTACTCTCATCTTCATTTGCGTTTGATGCAATTGCAAAACATGATTTCTCAATCAAAGAAGCCACAATTTCTGATTTACAACTTGCCTTCCGCGCCAATCAACTCACCTCGTGGCAGCTTGTTGAGTTCTACCTCGCAGAAATCAAGAAACTCAACCCTCTGTTAAAAGGGGTCATCGAGGTCAACCCAGAGGCGCTGCATTTGGCTGATAAGGCCGACCTTGAAAGATCCCCCGATCGTCTTTCCGATTTGCACGGGATCCCGATTCTACTCAAAGATAATATGGCAACTAGGGACAAACTCAACACAACGGCCGGCTCGCTTGCGTTGCAGGGATCGGTCGTGGCTCAAGACGCCGGCGTTGTGAGGAGACTGAGAGAAGCTGGGGCTATTATTTTAGGGAAGGCTAGCATGAGCGAGTGGGCTCATTTCAGATCTTTCAACGCCCCTAGCGGTTGGTGCGCCAGAAGTGGCCAAGGGAAGAATCCTTATGTCCTAAGAGCAGATCCTTGTGGTTCGAGTAGTGGGTCGGCCATTTCAGTAGCTGCAAACATGGTAGCTGTGTCTCTTGGCACAGAAACTGACGGCTCCATTTTATGTCCGTCCAGTTACAATTCAGTGGTGGGTATCAAACCAACAGTTGGCCTGACCAGCCGCTCTGGTGTAGTTCCTATTTCTCTTAGGCAGGACTCAGTTGGACCCATGGGCAGGACAGTATCCGACGCTGTAACGGTCCTTGAGGCCATTGTAGGATTTGACGAGGAAGATAAAGAAACTCAAAAAGCTTCGAAATTCATTCCAATTGGTGGATATAAGCAATTTCTTAACAAAGATGGTCTCCGAGGAAAGAGAATAGGGATCGTGAGGTCGAAGAAAATGAAAAACGGTGCGGTTTTGGTGGATCATCTCGAGATTAAGAGCATTGATATTATTATATTTGATTCCACACAAAGTGGGGAGCAGACAGCTTTGCAATCGGAGTTTAAAACAGACTTGAATGCATATCTTAAGAAGCTCGTGGCTTCACCGGTTAGAACTTTGGCTGATGTGATTGCCTTTAACAACAAACACTCGAATTCGGAAATGATCAGAGAGTTTGGACAGGACATCTTCCTGGAAGCGCAAGCCACAAATGGGATTGGGAAGAAGGAGAAGGAAGCTCTGCTGAAAATGGGTAGGCTAACCAGAGATGGGTTTGAAAGGTTAGTTATGGAGAAGAAGCTGGATGCGATTGTGACGCCTGCTTCTCTGGTCACTCCCGTCCTTGCCATTGGAGGCTTTCCTGGAATTAGTGTTCCGGCTGGATATGATAAAGGAGGTGTACCCATTGGGATATGCTTTGGAGGGCTCAAGGGCTCGGAGCCAAAGCTCATCCAGATCGCTTATGGCTTCGAGCAAGCTACCAAGATTCGAAAGCCTCCATCTTTTATAGAACATGAAGATTTGTAA 2652 49.02 MAAKVSPWGKPGAWALDSEAHEAELLAETQPNQNGHPTADFPSLAAAAAKPKKKKGQTIPLAEFTTYGGPKPPAVSTQPAGLTHEDLLILPTGPRERTAEELERSRLGGGFRNYGSNGSYDRSNRYSNSDDSSNSRWGSSRVSDETRRNNGGFGKEFVREAASSRADEIDNWTAGKRPIVSNGFEKREKGWFSDTRSSKADESDSWVSGKSFIPSETRKFSSNGSFDRDRRGGGFTSNGADVNSDKWGKKEGIARSVGERPRLNLQPRTVPLSNDGKPEDLENAAKPKGSNPFGEARPREEVLAGKGQDWKKIDEQFGLMKIKDAENAEKLNGSSPWKRSSGNGNSRLSEDRAERTWRKPDSIDTRPKRCRLGKLTQSPPTPPSMGIPFSLTVCVVELLILLLSSSFAFDAIAKHDFSIKEATISDLQLAFRANQLTSWQLVEFYLAEIKKLNPLLKGVIEVNPEALHLADKADLERSPDRLSDLHGIPILLKDNMATRDKLNTTAGSLALQGSVVAQDAGVVRRLREAGAIILGKASMSEWAHFRSFNAPSGWCARSGQGKNPYVLRADPCGSSSGSAISVAANMVAVSLGTETDGSILCPSSYNSVVGIKPTVGLTSRSGVVPISLRQDSVGPMGRTVSDAVTVLEAIVGFDEEDKETQKASKFIPIGGYKQFLNKDGLRGKRIGIVRSKKMKNGAVLVDHLEIKSIDIIIFDSTQSGEQTALQSEFKTDLNAYLKKLVASPVRTLADVIAFNNKHSNSEMIREFGQDIFLEAQATNGIGKKEKEALLKMGRLTRDGFERLVMEKKLDAIVTPASLVTPVLAIGGFPGISVPAGYDKGGVPIGICFGGLKGSEPKLIQIAYGFEQATKIRKPPSFIEHEDL 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26798381 26805487 - BLOR05804 Blo13g00523 68918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00523 883 MobiDBLite consensus disorder prediction 116 147 - -
Blo13g00523 883 MobiDBLite consensus disorder prediction 185 203 - -
Blo13g00523 883 MobiDBLite consensus disorder prediction 329 364 - -
Blo13g00523 883 Pfam Amidase 441 821 IPR023631 -
Blo13g00523 883 Pfam Plant specific eukaryotic initiation factor 4B 7 341 IPR010433 GO:0003743
Blo13g00523 883 MobiDBLite consensus disorder prediction 204 221 - -
Blo13g00523 883 Gene3D Amidase signature (AS) domain 403 877 IPR036928 -
Blo13g00523 883 MobiDBLite consensus disorder prediction 185 296 - -
Blo13g00523 883 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 400 877 - -
Blo13g00523 883 MobiDBLite consensus disorder prediction 26 156 - -
Blo13g00523 883 PANTHER AMIDASE 400 877 - -
Blo13g00523 883 MobiDBLite consensus disorder prediction 333 347 - -
Blo13g00523 883 SUPERFAMILY Amidase signature (AS) enzymes 418 877 IPR036928 -
Blo13g00523 883 MobiDBLite consensus disorder prediction 348 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00523 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - vvi:100252118 632.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00557 Blo-Chr4:4814883 Blo13g00523 Blo-Chr13:26798381 0 dispersed
Blo05g00561 Blo-Chr5:12412694 Blo13g00523 Blo-Chr13:26798381 1.12E-29 dispersed
Blo13g00523 Blo-Chr13:26798381 Blo19g00091 Blo-Chr19:2324934 1.34E-18 dispersed
Blo13g00522 Blo-Chr13:26770517 Blo13g00523 Blo-Chr13:26798381 0 tandem
Blo01g00010 Blo-Chr1:191531 Blo13g00523 Blo-Chr13:26798381 1.24E-18 transposed
Blo02g00903 Blo-Chr2:34898428 Blo13g00523 Blo-Chr13:26798381 1.22E-25 transposed
Blo10g00773 Blo-Chr10:24175407 Blo13g00523 Blo-Chr13:26798381 2.99E-17 transposed
Blo14g00639 Blo-Chr14:12715750 Blo13g00523 Blo-Chr13:26798381 3.39E-10 transposed
Blo13g00523 Blo-Chr13:26798381 Blo04g00556 Blo-Chr4:4800139 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g125 . . . . . . . . . . . . . . Sed05g2230 . . Bhi05g01736 Tan02g0704 Cmetu01g0664 . Hepe02g0439 . . Cla02g00441 Cam02g0450 Cec02g0449 Cco02g0468 Clacu02g0452 Cmu02g0447 Cre02g0780 . . . . . Csa07g00086 Chy11g00285 Cme01g01279 . Blo13g00523 . . . . . . Sed01g0214 . . . . . . . . Bhi10g01880 Tan05g1177 Cmetu11g0691 . Hepe08g0270 . . . . . . . . . . Csa02g01364 Chy01g00693 Cme11g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00523 Blo_Chr13 FPKM 0.0 0.0 0.098401 0.181322 0.21408 0.0 0.367618 0.35299 0.622094 0.970603