Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00525 ATGTCTTTTGGTGGCTTGTTGATCTCCATACCTGCCATTGCCATATCCATTTTCGATGCCGCAGACTTGTTCTACGAATCGCATATTCTTCGATATCTAGTTCGAAGAGAAAGTGTAGCATCAAAGTGGGAGATGATGGCTAAGACAAGAAAGAGCTTCCAATTAAACTCTGTTGCGAGCGTGACTATCCAGAATTACCATCTCTATCGACAAGTCATCCAGCCCGGTTGGAAATTAGGATGGACATGGAGAAATCAGGAGATAATTTTGTCGATGAATGGTGCTTTTGCTACAAGTCAAGGAAATTGTTCATCTTTCAAGTTTGAGGAACCACCACCACACTCCTGTGAGAAGAATCCTCAAGTACTCGATCTCTTGCCAGATGCCTCCCCGGAAAATCGATCGGAGAATTGCTGTAGAGCTGGCCTTCTGTCTGCTTGGGCTACTGACCCTTCCAAGTCATTCTCTTCTTTTGAAATTAGAGTTGGCAACTTGGGTTCAAATAATTCAGAAAAACCTCCAGCTAATCTCACTCTACTTGCACCCAGTCGAGGTTACACTTGCAGCCCTCTCGTGGACACCGATCCATCTATTTCTTCAGTCATTGGAGGAAGAAGGAAAATCCAGGCTTACAGAACATGGAAATCGACCTGTGCTTACTCGAGCTTTTTGGCAAATAAAACACCCGTTTGTTGTGTTTCCCTCTCAACATTTTACAATCCCAATGTCACTCCATGTCGGGCGTGTAGCTGCAGATGCCGAGACACAGATCAAACCAATGTTTCATGTATAAGGCCTTCGTCATCGATATCATCATTATTATCCACAAGTTCTACAGATGGTCTGGACATGGTCCGATGCACCGACCATATGTGCCCGGTTGGAGTCCATTGGCATATAAAGAACAATTATGTAGATCATTGGAGGGTTAAACTGACAGTTTCTAACTATAACTACGACAGGAACTACTCAGATTGGAACATCCTGGTTCAACATCCTGGTTTTGGACAGCCAACTCAAACATTTAGCTTCAACAGTTCAGCTATTCCATCTGTTGCATATGAAGATGCAGTCGCTGTATTTTGGGGGATAGAGTCATATAATGTCGAGCTATTGCAGGCCGATGAGGAGAACGTTGGTTTTGTGACGACGGAGATACTACTGAGGAAAGATCCGGAATCGTTCACTCTGAGCAACGGCTGGGGTTTTCCTCGAAGGGTATACTTCAATGGCGACAACTGTCAAATGTCTTTGCCGGATTCCTTTCCGACGTTGCCGAATTCTAGTTTTAAGCATCATCCTTCTTCCTTGATCTTCCTTCTCTTCTTCTTTGTCGTGTACATTACAGCTATGCAGACCGAAGCACTTCCTTTGGTGAACAAGTTCCAGCTCGCCGAGGACGTTAATTCCGTCTTTCCAAAAGGGGTTCCTTGGGTCCGGTATCAAGGAACCTACAAAGATCTGCACCTTGATTTAGTTTGGCCTGGAAAAGATGTAGCCCTGGGAGTTGATAGTGTGGGTACAGTTTCTTCGTCTCTTCTAGCCTATGCTTCTATCCAAGCATTACAGCCAGACTTAATAATAAATGCAGGAACTGCTGGTGGCTTCAAGGCAAAAGGTGCTTCCATTGGTGATGTGTATCTTGCGTCTGATTGTGCTTTCCATGATAGAAGGATACCTATACCAGTTTTTGATTTGTATGGAGTTGGTTTCCGGGAGGCACTCTCAACACCAAATATCGTGAAAGAACTTAACCTAAAGGTTGGCAAGTTGTCTACAGGAGACTCTTTAGATATGTCATCCCAAGATGAGGCATCAATTGTAGCAAATGACGCCACAATCAAAGACATGGAGGGAGCAGCTGTTGCGTATGTGGCAGATCTCTTCAAAGTTCCTGCCGTATTCATAAAAGCAGTGACTGACATAGTGGACGGAGAGAAGCCTACTGCGGAGGAGTTTTTGGAGAATCTGGTGACGGTGGCTGCTGCACTGGATCAAGCGGTCACGCAAATGCTATATAAATTCGATTCAACCGTGTTATTCGTCAACAGTAGTACAAGTAAAATCCTACATATGGCTGTGAAGCTCTACAGCGCAGGTTTGTTTTGCAGAAATAGCAGGCAAAGGCAATTGGGAAACATGGGGAATGGAGATTTTGCTGAAGGAGGAGGAGGTTTCAGTAGGAAAGCTAGCCCTGGTAAAGCAACGATTCTGGCTCTTGGCAAGGCTTTTCCCCACCAGCTTGTCATGCAGGAGTACCTCGTTGATGGCTACTTCAAAAACACCAACTGCAATGATCCTGACCTCAGGCAGAAGCTCACTCGACTCTGCAAAACAACAACAGTGAAAACCAGATACGTAGTGATGTCAGAAGAGATTCTAAAGCAATATCCAGAGCTCGCCATTGAAGGCCGACCAACAGTGAAGCAAAGGCTCGACATCTGCAATATCGCAGTCACGGAGATGGCCGTCGAAGCTTCAAAAGCTTGCATCAAGAACTGGGGAAGGACAGTTTCAGAGATAACCCACTTAGTCTACGTCTCTTCCAGCGAAGTCCGACTACCCGGCGGCGATCTCTATTTAGCCACTGTCCTCGGCCTCAGTCCCGAAACTCAACGGGTAATGCTCTACTTTATGGGTTGCTCCGGTGGAGTCGCTGGCCTCCGACTGGCAAAAGATATAGCCGAGAATAATCCCGGCAGTCGAGTTCTCCTCACCACATCCGAAACCACCGTTATTGGGTATAAACCGCCGAGTGCTCACCGGCCTTATGATCTCGTCGGAGTGGCCCTCTTCGGCGATGGTGCCGGAGCAATGGTGATCGGATCAGACCCGGTAGTGAACATCGAGCGTCCTCTTTTTGAACTTCACACCGCGATTCAGCAGTTCTTGCCGAACACGGAGAAAATTATAGACGGCCGACTGACGGAAGAGGGAATTAGTTTCAAGCTAGATAAGGAGCTTCCCCACATCATAGAAGACAACATCGAGAAATTCTGTGAGGACTTAATGGGAGTGGTCGGGTTCAACGGAAAGGAATATAACGAGCTATTTTGGGCGGTCCATCCGGGCGGGCCGGCGATATTGAACAGGTTGGAAAAGCGGCTGGATCTGTCGCCGGAAAAGCTGAACGCGAGTCGGCGGGCTCTGATGGACTACGGGAATGCAAGCAGTAATACGATTGTGTATGTGCTAGAGTACATGATAGAAGAGAGCTTGAAGATGAAGAAGGAAGGAGATGAAAATGGCGAGTGGGGATTGATTCTGGCTTTTGGGCCTGGGATTTCCTTCGAGGGAATTCTGGCCAGAAACTTGGCCGTCTGTTTCTAA 3330 46.7 MSFGGLLISIPAIAISIFDAADLFYESHILRYLVRRESVASKWEMMAKTRKSFQLNSVASVTIQNYHLYRQVIQPGWKLGWTWRNQEIILSMNGAFATSQGNCSSFKFEEPPPHSCEKNPQVLDLLPDASPENRSENCCRAGLLSAWATDPSKSFSSFEIRVGNLGSNNSEKPPANLTLLAPSRGYTCSPLVDTDPSISSVIGGRRKIQAYRTWKSTCAYSSFLANKTPVCCVSLSTFYNPNVTPCRACSCRCRDTDQTNVSCIRPSSSISSLLSTSSTDGLDMVRCTDHMCPVGVHWHIKNNYVDHWRVKLTVSNYNYDRNYSDWNILVQHPGFGQPTQTFSFNSSAIPSVAYEDAVAVFWGIESYNVELLQADEENVGFVTTEILLRKDPESFTLSNGWGFPRRVYFNGDNCQMSLPDSFPTLPNSSFKHHPSSLIFLLFFFVVYITAMQTEALPLVNKFQLAEDVNSVFPKGVPWVRYQGTYKDLHLDLVWPGKDVALGVDSVGTVSSSLLAYASIQALQPDLIINAGTAGGFKAKGASIGDVYLASDCAFHDRRIPIPVFDLYGVGFREALSTPNIVKELNLKVGKLSTGDSLDMSSQDEASIVANDATIKDMEGAAVAYVADLFKVPAVFIKAVTDIVDGEKPTAEEFLENLVTVAAALDQAVTQMLYKFDSTVLFVNSSTSKILHMAVKLYSAGLFCRNSRQRQLGNMGNGDFAEGGGGFSRKASPGKATILALGKAFPHQLVMQEYLVDGYFKNTNCNDPDLRQKLTRLCKTTTVKTRYVVMSEEILKQYPELAIEGRPTVKQRLDICNIAVTEMAVEASKACIKNWGRTVSEITHLVYVSSSEVRLPGGDLYLATVLGLSPETQRVMLYFMGCSGGVAGLRLAKDIAENNPGSRVLLTTSETTVIGYKPPSAHRPYDLVGVALFGDGAGAMVIGSDPVVNIERPLFELHTAIQQFLPNTEKIIDGRLTEEGISFKLDKELPHIIEDNIEKFCEDLMGVVGFNGKEYNELFWAVHPGGPAILNRLEKRLDLSPEKLNASRRALMDYGNASSNTIVYVLEYMIEESLKMKKEGDENGEWGLILAFGPGISFEGILARNLAVCF 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 26825643 26833641 - BLOR05806 Blo13g00525 68920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00525 1109 Gene3D - 953 1108 IPR016039 GO:0016746
Blo13g00525 1109 Pfam Phosphorylase superfamily 446 671 IPR000845 GO:0003824|GO:0009116
Blo13g00525 1109 SUPERFAMILY Thiolase-like 952 1103 IPR016039 GO:0016746
Blo13g00525 1109 CDD CHS_like 735 1101 - -
Blo13g00525 1109 PANTHER TYPE III POLYKETIDE SYNTHASE B 729 1106 - -
Blo13g00525 1109 Pfam COBRA-like protein 58 221 IPR006918 GO:0010215|GO:0031225
Blo13g00525 1109 Gene3D Nucleoside phosphorylase domain 444 680 IPR035994 GO:0003824|GO:0009116
Blo13g00525 1109 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 729 1106 IPR011141 GO:0009058|GO:0016747
Blo13g00525 1109 Pfam Chalcone and stilbene synthases, N-terminal domain 728 945 IPR001099 -
Blo13g00525 1109 Gene3D - 726 952 IPR016039 GO:0016746
Blo13g00525 1109 SUPERFAMILY Purine and uridine phosphorylases 446 669 IPR035994 GO:0003824|GO:0009116
Blo13g00525 1109 CDD MTAN 448 671 - -
Blo13g00525 1109 Pfam Chalcone and stilbene synthases, C-terminal domain 955 1105 IPR012328 -
Blo13g00525 1109 SUPERFAMILY Thiolase-like 732 946 IPR016039 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00525 - - - tcc:18607619 666.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00551 Blo13g00525 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00164 Blo-Chr10:1961135 Blo13g00525 Blo-Chr13:26825643 2.08E-116 dispersed
Blo13g00525 Blo-Chr13:26825643 Blo15g00345 Blo-Chr15:4346480 7.40E-32 dispersed
Blo16g00135 Blo-Chr16:3083668 Blo13g00525 Blo-Chr13:26825643 4.59E-97 dispersed
Blo02g00383 Blo-Chr2:4424319 Blo13g00525 Blo-Chr13:26825643 5.52E-166 transposed
Blo13g00525 Blo-Chr13:26825643 Blo04g00551 Blo-Chr4:4768555 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012224 2 1 1 1 0 1 2 1 1 1 0 1 2 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00525 Blo_Chr13 FPKM 2.953577 3.750328 11.8816 11.31767 31.018871 29.79936 33.481102 5.778805 6.080887 6.357615