Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00531 ATGTCCATTATAGCAGAGAGGGATGCCGCAATCCGAGAACGTAATATCGCGCTCTCTGAAAAGAACGAAGCTTTGGCCGTGCGGGATGAGGCCCTTCGGCAGAGAGATGAAGCCCTTAATCAGCGAGATACTGCACTAATGGAGCGAGACAATGCCCTTGCAGCCCTTCAAATACGTGATCATAGTGTCAGCTTCCCAATGGGCAGTTCAATCCAACGCAAAAATAAGCGTTTGCACCACCCTTCAAACCACGTAGCAAATATGACAGAAGCTCCATACAGTGCTAAAGAACTTCAAATAACTGAAGCTTTTCCAATTACAGCCATAGCTTCCGAGGCTGTTAAGTCTCAACGAGGAAAGCAAACGAAGGAGAACAAAGTAGTTTCATCTAAGCCGCAAAGGGCACCTAGGAAGAAAGTGGGCGAAGATTTGAATAGACAAGCTGCCTCTGATGGGATAAAGTACAGAACTGATTGGGATGTTCAGGACATGGGGCTGAACCTTGTTAGTTTTGATGAATCTATCATGCCAGCTCCAATTTGCACGTGCACTGGAGCTCCTAGACAATGCTATAAATGGGGGAATGGAGGGTGGCAGTCATCTTGCTGCACCATCAATATGTCACAGTATCCACTTCCACAAATGCCTAACAAGCAACATGCCAGAATGGGAGGACGAAAAATGAGTGGAAGTGTCTTTGCTCGATTGCTTAGCAGGCTAGCAGCAGAAGGCCATGATCTTTCAGTATCAGTGGATCTCAAGGACCACTGGGCTAGACATGGAACAAACCGCTATATTACCATCAGGTAG 810 46.67 MSIIAERDAAIRERNIALSEKNEALAVRDEALRQRDEALNQRDTALMERDNALAALQIRDHSVSFPMGSSIQRKNKRLHHPSNHVANMTEAPYSAKELQITEAFPITAIASEAVKSQRGKQTKENKVVSSKPQRAPRKKVGEDLNRQAASDGIKYRTDWDVQDMGLNLVSFDESIMPAPICTCTGAPRQCYKWGNGGWQSSCCTINMSQYPLPQMPNKQHARMGGRKMSGSVFARLLSRLAAEGHDLSVSVDLKDHWARHGTNRYITIR 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27086332 27087141 - BLOR05812 Blo13g00531 68926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00531 269 PANTHER - 1 269 IPR010409 -
Blo13g00531 269 MobiDBLite consensus disorder prediction 117 145 - -
Blo13g00531 269 SMART GAGA_bind_2 1 269 IPR010409 -
Blo13g00531 269 Pfam GAGA binding protein-like family 1 269 IPR010409 -
Blo13g00531 269 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 269 - -
Blo13g00531 269 MobiDBLite consensus disorder prediction 115 147 - -
Blo13g00531 269 Coils Coil 21 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00531 - - - qsu:112013863 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00531 Blo-Chr13:27086332 Blo17g00751 Blo-Chr17:23579358 4.56E-112 wgd
Blo13g00531 Blo-Chr13:27086332 Blo18g00782 Blo-Chr18:22560307 1.82E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g55 . . . . . Bpe12g00098 . . Cmo19g00710 . . . . . Sed11g1487 Cpe04g00095 Cpe15g00568 Bhi05g01776 Tan02g2047 Cmetu03g1142 . . . . Cla02g00476 Cam02g0483 Cec02g0485 Cco02g0490 Clacu02g0486 Cmu02g0481 Cre02g0816 Cone12ag1196 Cone8ag1244 . . . Csa07g00049 . Cme01g01320 . Blo13g00531 Bda15g01061 . . . . Bma08g00777 . . . . Cma19g00701 . Car19g00543 . . . . . . . . . . . . . . . . Lsi11g01148 . Chy01g00732 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo06g00996 . 1 280 BBR/BPC Transcription factor family AT2G01930 53.0 3.0e-78 288.9
Blo11g00754 . 2 274 BBR/BPC Transcription factor family AT2G01930 55.3 1.8e-75 279.6
Blo06g00997 . 2 271 BBR/BPC Transcription factor family AT2G01930 54.5 2.2e-73 272.7
Blo11g00754 . 154 274 BBR/BPC Transcription factor family AT2G35550 57.9 4.0e-41 165.2
Blo06g00997 . 151 271 BBR/BPC Transcription factor family AT2G35550 57.9 6.8e-41 164.5
Blo06g00996 . 163 280 BBR/BPC Transcription factor family AT2G35550 55.9 6.3e-39 157.9
Blo06g00997 . 2 271 BBR/BPC Transcription factor family AT1G68120 51.2 2.9e-67 252.3
Blo18g00782 . 616 725 BBR/BPC Transcription factor family AT1G68120 55.5 5.4e-37 151.8
Blo13g00531 . 102 269 BBR/BPC Transcription factor family AT2G21240 67.5 1.3e-63 240.4
Blo17g00751 . 1 336 BBR/BPC Transcription factor family AT2G21240 50.6 1.9e-59 226.5
Blo13g00531 . 1 269 BBR/BPC Transcription factor family AT4G38910 59.9 1.7e-57 219.9
Blo17g00751 . 88 336 BBR/BPC Transcription factor family AT5G42520 56.9 2.0e-74 276.2
Blo18g00782 . 477 725 BBR/BPC Transcription factor family AT5G42520 55.8 1.6e-71 266.5
Blo11g00754 . 154 274 BBR/BPC Transcription factor family AT2G35550 57.9 4.0e-41 165.2
Blo06g00997 . 151 271 BBR/BPC Transcription factor family AT2G35550 57.9 6.8e-41 164.5
Blo06g00996 . 163 280 BBR/BPC Transcription factor family AT2G35550 55.9 6.3e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006274 1 3 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13148 PF06217 GAGA_bind 3.60E-94 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00531 Blo_Chr13 FPKM 21.748148 24.586803 40.43832 39.443874 16.816589 19.62208 18.377666 38.11787 36.667805 41.439968