Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00532 ATGGAGCTCAGTCTAGTTTTGGTGATCAGAGCGTTTTGGATTGCGGGGACACTGCCTATGCTCGTAGCTTTCTTGCCCTTCTCTTGGTTGAGACCTTTTCATGCAATTCTGTTGGGGTTTGCCAAGAGAGGAAAGATCATGAAGTCATCTTCACATAAATTTACTGTTCCACAGAAGTTCTTCTATCATTTCTATGTGCTAGCTGTGATCTGGACTACAATATTGCTTGTATCAACTTGGATGTATGCGTATAGCCTCACACCAGTTCTCTCGAAATCATTTGTTTATTCTACCATTACCAGCCGGTTGGCTGGAGGTTCCCATTTCTTCTCCTCTCCTCCAATTCCAAGGGATCAGTGGTTAATGGTTTGGCAATCAGTTTTTTTGCTTTTGTTGATGGAGATTCAAGTTTTAAGACGCCTGTATGAAACTGTATACATCTTCAACTACAGCCCATCTGCTAGGATGCACATTTTTGGTTATCTAACTGGCCTGTATTTCTACACAGCTACTCCGCTGTCTCTTTGTTGTAACTGCATGGCGGAAACCTATAAATTTACAGCAAAATTAGTTGCAGAGTTCACTGTCAAGCGGAAAATGCAAATGGCAGCCATTGATATCAATTTGTGGGAATTGTTTAATCCTTTCACAAAGCTTGGGTGGAATCAGTGGATTGGTGCAACTATATTTTTGTGGGGTTGGATTCATCAGTCCCGTTGTCACACAATTTTGGGCTCTTTACGACAACAGCGTGATCAAAAGGAAGAATATGTAATCCCTCGTGGCGATTGGTTTGAAGTTGTTTCATCCCCGCACTATCTTGCTGAGATTGTGATATATGCTGGTCTAGTAACAGCAAATGGAGGAGACCTTTCAGCCTGGCTTTTGTTTGGATTTGTGGTTGCAAATCTTGGCCTTGCAGCAGCAGAAACACAGAGGTGGAAACTTTTTAAGGTTGATCACTTTGTGTCACACTCCAAAAGAGCCGTCAAAATGTTTTTTGATGAATATGGATACCATGGAACATCGTTTGAGCAAACATATCAGTGTTATTCTGCATCGTTCATTGATAAGTTTCTCAATTGCGTCATGCAGCCCCAAATTGAACTTGGCGATAAAATTATAATGCCTTCATCAGCCCTTGACCGGCTTGCATCTTTGCATATTGATTATCCAATGTTGTTTGAGCTTCGAAATGAGACTGCTGAAAGGGTTTCTCATTGTGGAGTTTTGGAGTTTGTTGCAGAAGAAGGAATGATCTATATGCCATATTGGATGATGGAAAACATGCTTCTACAAGAAGGAGATAGAGTGAAAGTGAAAAATGTAACTCTTCCAAAGGGAACTTACGTAAAATTGCAACCCCACACAAAGGATTTTTTGGATATATCTAATCCTAAAGCAATCTTGGAGACAAGATTGAGGAATTTTTCCTGTTTAACCACCGGAGATAGTATTATGGTTGCATATAATAACAAGAAGTATTATATCGATATTATTGAAGCAAAGCCTTCCAATGCCATTAGTATTATTGAAACTGACTGCGAGGTTGATTTTGCTCCTCCCTTGGATTACAAGGAACCAGAAAAGCCTATGAGCAGCCAGTCAAACAAGGCACAGCCAGTTCAAGAGGCTCCAGAAAAGGCTGAACCTGAATTTAGTGCTTTTAATGGGGTAGGAAGACGATTGGACGGAAAACCATTGAAGCATCAACCTTCTCCAGTTTTTTCAAGTCAGTCGAGAGATAAGAAACCCGAGACTAGAAATAGTAGCAATGCGCAACCTTCGGCAGCATCTACCTCTCAGAACCCTTCTCCTCAATCTCAGGGAAAGCTCGTGTTTGGATCGAATGCAAACCGAATTCCTAAAGCAACAAAGGAGCTTTCGCTCGAGGAAATGGCGGCGATGCAGTGGTGCGGCGCAGTTGCCAGACGATTTGCAGTGGCGGGACAATTTCCGCTATCATCGTCGGCGGCGGAAATTCCTCCGATTCTGTGTGGACGAGGGGATAAGAAGACGAAGAAAGGGAAGAGATTCAAGGGCTCGTACGGAAACTCGAGGCCGAAGAAGGAGAAAATGATAGAGCGGATCAAGGACAAGGTCGAGGTTCCCAGGTCGACGCCATGGCCTCTCCCTTTCAAGCTCATCTAA 2151 42.82 MELSLVLVIRAFWIAGTLPMLVAFLPFSWLRPFHAILLGFAKRGKIMKSSSHKFTVPQKFFYHFYVLAVIWTTILLVSTWMYAYSLTPVLSKSFVYSTITSRLAGGSHFFSSPPIPRDQWLMVWQSVFLLLLMEIQVLRRLYETVYIFNYSPSARMHIFGYLTGLYFYTATPLSLCCNCMAETYKFTAKLVAEFTVKRKMQMAAIDINLWELFNPFTKLGWNQWIGATIFLWGWIHQSRCHTILGSLRQQRDQKEEYVIPRGDWFEVVSSPHYLAEIVIYAGLVTANGGDLSAWLLFGFVVANLGLAAAETQRWKLFKVDHFVSHSKRAVKMFFDEYGYHGTSFEQTYQCYSASFIDKFLNCVMQPQIELGDKIIMPSSALDRLASLHIDYPMLFELRNETAERVSHCGVLEFVAEEGMIYMPYWMMENMLLQEGDRVKVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETRLRNFSCLTTGDSIMVAYNNKKYYIDIIEAKPSNAISIIETDCEVDFAPPLDYKEPEKPMSSQSNKAQPVQEAPEKAEPEFSAFNGVGRRLDGKPLKHQPSPVFSSQSRDKKPETRNSSNAQPSAASTSQNPSPQSQGKLVFGSNANRIPKATKELSLEEMAAMQWCGAVARRFAVAGQFPLSSSAAEIPPILCGRGDKKTKKGKRFKGSYGNSRPKKEKMIERIKDKVEVPRSTPWPLPFKLI 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27096627 27104147 + BLOR05813 Blo13g00532 68927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00532 716 MobiDBLite consensus disorder prediction 589 615 - -
Blo13g00532 716 Gene3D - 336 445 IPR042299 -
Blo13g00532 716 Pfam Ribosomal protein S31e 648 708 IPR030826 GO:0005840
Blo13g00532 716 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 332 632 IPR004854 GO:0006511
Blo13g00532 716 Gene3D - 447 520 - -
Blo13g00532 716 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 221 321 IPR001104 GO:0006629|GO:0016627
Blo13g00532 716 MobiDBLite consensus disorder prediction 521 618 - -
Blo13g00532 716 TIGRFAM ribo_THX: ribosomal small subunit protein bTHX 667 690 IPR030826 GO:0005840
Blo13g00532 716 MobiDBLite consensus disorder prediction 669 689 - -
Blo13g00532 716 PANTHER UBIQUITIN FUSION DEGRADATION PROTEIN 1 HOMOLOG 332 632 - -
Blo13g00532 716 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 226 309 IPR001104 GO:0006629|GO:0016627
Blo13g00532 716 Pfam Ubiquitin fusion degradation protein UFD1 344 522 IPR004854 GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00532 K14016 UFD1; ubiquitin fusion degradation protein 1 - tcc:18607683 460.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01155 Blo-Chr7:31418565 Blo13g00532 Blo-Chr13:27096627 3.16E-06 dispersed
Blo07g00457 Blo-Chr7:9507474 Blo13g00532 Blo-Chr13:27096627 0 transposed
Blo13g00532 Blo-Chr13:27096627 Blo04g00543 Blo-Chr4:4665240 2.57E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g54 . . . . . Bpe12g00097 . . . . . . . . Sed05g2282 Cpe04g00096 . Bhi05g01779 Tan02g0746 Cmetu01g1015 . Hepe02g0462 . . Cla02g00477 Cam02g0485 Cec02g0487 Cco02g0492 Clacu02g0487 Cmu02g0483 Cre02g0818 . . . . . Csa07g00047 . . . Blo13g00532 Bda15g01062 . . . . Bma08g00778 . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01146 . Chy01g00733 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007485 1 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00532 Blo_Chr13 FPKM 0.195455 0.341072 1.464338 1.383301 0.0 0.0 0.590327 4.900823 7.607739 6.268058