Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00534 ATGACTGGAAAAAAAGACAGAGAGAAAGAGAAGCTTTACGCAGGGAAGAAAGCGAAGCAAATGGGTGAAAAAGCAGGCCTAGCAAAAGGCAGGAGAAGAAAGGCAGAGCGGGACGGATTGCTAGCGAAACCAGATACAAAAAAGGAGGATCTCATTGAATTCAGGCATATGGAGAACGCAATGTACCAGCCAGAAACAGTTTCAGTCTCTCTCTATCTCCTCCTCTCCCTGACGCAGGCTCAATCTTCAGCTGAGAAAGCGGAAAGACGAACACTTTCATTAGTGCCTCCCCCATCTCAATATCAGTGTTCAAGTAGGGACAATCTTTGCAAAAACTGTAAGAGACCCGGTCACTTTGCTAGAGAATGCCCAAATGTTGCTGTTTGTCACAACTGTGGTCTTCCTGGGCACATTGCATCTGAATGCACGACAAAGTCACTTTGTTGGAACTGTCGAGAACCTGGTCATGTGGCGAGCAGCTGTCCAAATGAGGGTATATGCCACACTTGTGGAAAGGTGGGGCACCGTGCCAAAGATTGCACTGCCCCTCCTCTGCCACCTGGAGACTTGAGGCTGTGCAACAACTGCTACAAACAGGGGCACATAGCTGCTGACTGCACTAATGACAAGGCATGCAACAATTGTAGGAAAACAGGTCATCTGGCAAGGGATTGTCCAAACGAGCCCATATGCAATTTGTGCAATGTTTCTGGCCATGTTGCTAGACAATGCCCCAAATCGAATGTTCTTGGAGACAACATTGGTGGTGGTGTTAGAAGCAGTGGCTATCACGATGTTATTTGTAGGAACTGCCAGCAGCCTGGCCATAAGAGCAGAGACTGCATGGGTCCCTTGATGATATGCCATAATTGCGGGGGACGAGGACACTTGGCGTATGAGTGCCCTTCCGGAAGGTTTATGGACCGTTACGCCAGGAGTCAGGACGATGGAGATTGCGAAGAACTCATTAGACAAGAGACATGCTTGTCGTTGTTCAAACTGTATGCCGAGCTTTTGCCTCTGTTTTGTTTATTTGTTAATTCTACATTAGACTTTTCTTAA 1062 47.36 MTGKKDREKEKLYAGKKAKQMGEKAGLAKGRRRKAERDGLLAKPDTKKEDLIEFRHMENAMYQPETVSVSLYLLLSLTQAQSSAEKAERRTLSLVPPPSQYQCSSRDNLCKNCKRPGHFARECPNVAVCHNCGLPGHIASECTTKSLCWNCREPGHVASSCPNEGICHTCGKVGHRAKDCTAPPLPPGDLRLCNNCYKQGHIAADCTNDKACNNCRKTGHLARDCPNEPICNLCNVSGHVARQCPKSNVLGDNIGGGVRSSGYHDVICRNCQQPGHKSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYARSQDDGDCEELIRQETCLSLFKLYAELLPLFCLFVNSTLDFS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27120045 27126973 + BLOR05815 Blo13g00534 68929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 212 227 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Gene3D - 165 209 - -
Blo13g00534 353 Gene3D - 210 257 - -
Blo13g00534 353 PANTHER OS10G0545300 PROTEIN 101 312 - -
Blo13g00534 353 SUPERFAMILY Retrovirus zinc finger-like domains 261 304 IPR036875 GO:0003676|GO:0008270
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 110 125 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SUPERFAMILY Retrovirus zinc finger-like domains 187 228 IPR036875 GO:0003676|GO:0008270
Blo13g00534 353 SUPERFAMILY Retrovirus zinc finger-like domains 146 183 IPR036875 GO:0003676|GO:0008270
Blo13g00534 353 Gene3D - 258 307 - -
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 288 303 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 230 246 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 287 303 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 128 143 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 166 181 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 267 281 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 192 208 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 211 227 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 109 125 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 193 208 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 268 281 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SUPERFAMILY Retrovirus zinc finger-like domains 103 145 IPR036875 GO:0003676|GO:0008270
Blo13g00534 353 MobiDBLite consensus disorder prediction 1 41 - -
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 129 142 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 231 246 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 167 180 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 ProSiteProfiles Zinc finger CCHC-type profile. 148 163 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 PANTHER - 101 312 - -
Blo13g00534 353 Gene3D - 126 164 - -
Blo13g00534 353 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SMART c2hcfinal6 211 227 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SMART c2hcfinal6 287 303 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SMART c2hcfinal6 109 125 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SMART c2hcfinal6 267 283 IPR001878 GO:0003676|GO:0008270
Blo13g00534 353 SMART c2hcfinal6 230 246 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00534 K09250 CNBP; cellular nucleic acid-binding protein - jre:108999359 441.425
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00539 Blo13g00534 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00069 Blo-Chr8:674114 Blo13g00534 Blo-Chr13:27120045 6.98E-06 dispersed
Blo13g00534 Blo-Chr13:27120045 Blo07g00410 Blo-Chr7:7637735 3.09E-07 dispersed
Blo13g00534 Blo-Chr13:27120045 Blo04g00539 Blo-Chr4:4639718 1.03E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00534 Blo_Chr13 FPKM 12.318721 14.027614 14.251168 14.301805 15.203272 14.178798 15.421022 12.731309 12.228135 13.631221