Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00542 ATGTGCTGCTCAGCGGGTGACTGTGTTCTCATGCGCCCCTCCGATCATTCCAAGCCGTCCTACGTTGCAAAGATCGAGCGGATCGAGGCGGATTCCCGTGGAGCCAATGTTAAAATTCATGTCCGCTGGTACTATCGGCCGGAGGAGTCGATCGGTGGTCGGAGACAGTTTCATGGATCGAAAGAGGTGTTTCTTTCCGATCATTATGATGTCCAGAGTGCCGATACTGTTGAAGGCAAGTGCATGGTCCACAGCTTCAAGAGCTATACCAAGCTCGATGCTGTGGGAAATGACGATTTCTTTTGTCGTTTTGAGTATAATTCCGCCACCGGAGCTTTTAATCCAGATAGAGTTGCTGTATATTGCAAATGTGAGATGCCTTATAACCCTGATGATCTAATGGTTCAGTGTGAGGGTTGCAGTGATTGGTTTCATCCTGCTTGTATAGAAATGACAGTAGAAGAAGCTAAAAGACTTGACAAGTTCTTCTGTGAAAGTTGCTCATCGGAGGGTCAAAATAAGTTGCAGAATTCTCATACCGCTTCCAGACATCCTGATACAAAGGTATTTTTAAAAATGGTGATTACATTTGATAATGTCTTTGAATTCTATTTCATATGGAAATGA 627 44.02 MCCSAGDCVLMRPSDHSKPSYVAKIERIEADSRGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHYDVQSADTVEGKCMVHSFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIEMTVEEAKRLDKFFCESCSSEGQNKLQNSHTASRHPDTKVFLKMVITFDNVFEFYFIWK 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27279434 27281687 - BLOR05823 Blo13g00542 68937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00542 208 PANTHER CHROMATIN REMODELING PROTEIN SHL 4 189 IPR045205 GO:0006325|GO:0035064
Blo13g00542 208 Pfam PHD-finger 121 169 IPR019787 -
Blo13g00542 208 Pfam BAH domain 4 116 IPR001025 GO:0003682
Blo13g00542 208 ProSitePatterns Zinc finger PHD-type signature. 122 167 IPR019786 -
Blo13g00542 208 SMART BAH_4 1 117 IPR001025 GO:0003682
Blo13g00542 208 ProSiteProfiles Zinc finger PHD-type profile. 119 170 IPR019787 -
Blo13g00542 208 SUPERFAMILY FYVE/PHD zinc finger 111 171 IPR011011 -
Blo13g00542 208 SMART PHD_3 121 168 IPR001965 -
Blo13g00542 208 Gene3D - 2 115 IPR043151 -
Blo13g00542 208 PANTHER OS08G0421900 PROTEIN 4 189 - -
Blo13g00542 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 183 IPR013083 -
Blo13g00542 208 ProSiteProfiles BAH domain profile. 1 117 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00542 - - - mnt:112093853 373.629
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00542 Blo15g00679 CCT
Blo04g00526 Blo13g00542 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00542 Blo-Chr13:27279434 Blo14g00016 Blo-Chr14:112890 9.58E-104 dispersed
Blo13g00542 Blo-Chr13:27279434 Blo04g00526 Blo-Chr4:4532435 3.12E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000538 4 7 4 5 4 2 5 3 2 2 2 2 4 3 2 4 2 4 5 2 2 3 3 3 3 3 3 10 9 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13149 PF01426 BAH 3.30E-22 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00542 Blo_Chr13 FPKM 0.0 0.0 0.267623 0.072605 1.346342 1.863251 1.504578 0.0 0.0 0.0