Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00550 ATGAACACAGCCTCGCCGGAGATGCTCCACTGCCTCACCGCCCCCGTAATCTGCGCTGACACTACCTTCTTGGAGAGACAGACTGGCCGCCTTAAAAGGCACCATGACCAGCTTCCCCACCCCCTCCTCCATAACTACTCTACCTACTCTTTTCCGGCGTCGATTCAGGCCGCTCTGGTCCCTAATTCGCTAACGAGTGGCGGCAAAACGGAGCTCAGTGAGGTTAAGCGAGACATGGGTTTGAAAAACGGGTGGTCGGGAATGGGCAAGTTTGAGATTCCGACCGTGGGTCTTGGGTCTGGATTAGAACTGAATTCTTCAATTTCAAGAACTTCCAGGAGTCCACCGGTTATAATGGAGATGAAGAACAGAGAGTCAGTTTTGTCTGAAAGCTTCAAGAAAAGAAAGACGAACACAAAGATTGTTAATGAGGAAGACACGAAAGAAAAGAGGATCAAAGTATGTGCAGAAGAGGGAGATTCAAAGGTTACAGACCAAATTCCGACGAAAAACAATTCCACTGCCACGACCGCCATTAGAGAAACCTCTGCAGATACATCAAAGGAGAACACAAAAGCTTCCGAGGTTCAAAAACCAGATTACATTCACGTTCGAGCTCGTCGAGGCCAAGCCACTGACAGCCATAGCCTCGCTGAAAGAGCAAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATCTAGTGCCAGGATGTAATAAGATTACAGGAAAAGCTGGGATGCTGGACGAAATTATAAACTATGTTCAATCCCTACAAAGACAAGTCGAGTTCTTGTCGATGAAATTAGCTGCGGTAAACCCACGTCTTGACTTCAATCTCAACGTCGATGAAATCTTTCCTAAAGAGGCTCATCCTACTTGTGCTTCACAATTTCCACCAGTAGGTGTACAATCAGAGCTTGATAGCCCTGTCTACCTCCACTTTGATCAGTCACAGCAAATGGGTTCATTCTGTGGGCAGGAAATGAGTTCAGATGGGCTTCGCCGGACAATCAGTGCTCCGGGCTCAATCCCGGAAAATTTTCTCGTACCCACCTGCTTTCCGCCCTCTTCAGCTTGGGATGTAGATTTTCAGAGCCTGTATGACGTAGGATTTGATCAGGGACGAACAGAAGCCTTTCCATCTCAGCCTTACACAGGTTGA 1170 47.18 MNTASPEMLHCLTAPVICADTTFLERQTGRLKRHHDQLPHPLLHNYSTYSFPASIQAALVPNSLTSGGKTELSEVKRDMGLKNGWSGMGKFEIPTVGLGSGLELNSSISRTSRSPPVIMEMKNRESVLSESFKKRKTNTKIVNEEDTKEKRIKVCAEEGDSKVTDQIPTKNNSTATTAIRETSADTSKENTKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLNVDEIFPKEAHPTCASQFPPVGVQSELDSPVYLHFDQSQQMGSFCGQEMSSDGLRRTISAPGSIPENFLVPTCFPPSSAWDVDFQSLYDVGFDQGRTEAFPSQPYTG 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27394887 27396530 - BLOR05831 Blo13g00550 68945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00550 389 CDD bHLH_AtBPE_like 200 283 - -
Blo13g00550 389 MobiDBLite consensus disorder prediction 165 184 - -
Blo13g00550 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 260 IPR011598 GO:0046983
Blo13g00550 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 279 IPR036638 GO:0046983
Blo13g00550 389 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983
Blo13g00550 389 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 73 378 - -
Blo13g00550 389 SMART finulus 216 266 IPR011598 GO:0046983
Blo13g00550 389 MobiDBLite consensus disorder prediction 163 195 - -
Blo13g00550 389 Gene3D - 207 282 IPR036638 GO:0046983
Blo13g00550 389 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 378 IPR024097 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00594 Blo-Chr12:24232549 Blo13g00550 Blo-Chr13:27394887 2.53E-44 dispersed
Blo13g00550 Blo-Chr13:27394887 Blo15g00700 Blo-Chr15:22161819 2.20E-97 dispersed
Blo13g00550 Blo-Chr13:27394887 Blo04g00514 Blo-Chr4:4377456 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13150 PF00010 HLH 1.00E-06 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00550 - - jre:109013802 404.831