Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00556 ATGCCTTCGAGAAGAAGAACGCTCTTGAAAGTCATCATTCTCGGCGATAGTGGGTCTGTAGCTTCATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACAATTGGAGCTGATTTTTTAACAAAAGAAGTCCAATTTGAGGATAGGCTCTTTACATTGCAGATCTGGGATACAGCGGGCCAGGAAAGATTTCAAAGCCTAGGTGTTGCTTTCTATCGTGGTTCTGATTGTTGTGTGCTAGTCTATGATGTTAATTCTATGAAATCATTTGACAACCTTAACAACTGGCGAGAAGAATTTCTTATCCAGGCGAGTCCTTCAGATCCAGAAAATTTTCCTTTTGTTGTTTTAGGAAACAAAGTTGATGTGGATGGTGGAAATTGTAGAGTAGTTTCAGAGAAAAAAGTTCTAGCATGGTGTGGATCAAAAGGAAATATTCCATACTTCGAGACATCTGCTAAAGATGGCATCAATGTGGAAGAAGCTTTCCAGTGCATCGCAAAGAATGCCCTCAAAAGTGGGGAAGAGGAAGAGATGTAA 543 39.59 MPSRRRTLLKVIILGDSGSVASYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGSDCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNCRVVSEKKVLAWCGSKGNIPYFETSAKDGINVEEAFQCIAKNALKSGEEEEM 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27536561 27538972 + BLOR05837 Blo13g00556 68951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00556 180 ProSiteProfiles small GTPase Ras family profile. 3 180 IPR001806 GO:0003924|GO:0005525
Blo13g00556 180 PANTHER RAS-RELATED PROTEIN RABG3F 1 180 - -
Blo13g00556 180 Pfam Ras family 10 172 IPR001806 GO:0003924|GO:0005525
Blo13g00556 180 CDD Rab7 9 177 - -
Blo13g00556 180 PANTHER RAB FAMILY 1 180 - -
Blo13g00556 180 SMART ran_sub_2 14 180 - -
Blo13g00556 180 SMART rab_sub_5 9 174 - -
Blo13g00556 180 TIGRFAM small_GTP: small GTP-binding protein domain 25 167 IPR005225 GO:0005525
Blo13g00556 180 PRINTS Transforming protein P21 ras signature 111 124 - -
Blo13g00556 180 PRINTS Transforming protein P21 ras signature 149 171 - -
Blo13g00556 180 PRINTS Transforming protein P21 ras signature 27 43 - -
Blo13g00556 180 PRINTS Transforming protein P21 ras signature 45 67 - -
Blo13g00556 180 SMART ras_sub_4 6 174 - -
Blo13g00556 180 ProSiteProfiles small GTPase Rab1 family profile. 3 180 - -
Blo13g00556 180 Gene3D - 2 180 IPR027417 -
Blo13g00556 180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 173 IPR027417 -
Blo13g00556 180 SMART rho_sub_3 11 174 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00556 K07897 RAB7A; Ras-related protein Rab-7A - twl:119990327 340.117
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00507 Blo13g00556 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00094 Blo-Chr5:871459 Blo13g00556 Blo-Chr13:27536561 2.78E-104 dispersed
Blo06g00690 Blo-Chr6:30044175 Blo13g00556 Blo-Chr13:27536561 2.55E-104 dispersed
Blo13g00556 Blo-Chr13:27536561 Blo16g00503 Blo-Chr16:20053075 1.08E-59 dispersed
Blo12g00771 Blo-Chr12:26135006 Blo13g00556 Blo-Chr13:27536561 3.87E-72 transposed
Blo13g00556 Blo-Chr13:27536561 Blo04g00507 Blo-Chr4:4302716 2.91E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00556 Blo_Chr13 FPKM 22.826458 26.143002 14.09234 13.123986 21.465355 23.799337 20.248493 18.806992 24.072258 18.841997