Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo13g00559 | ATGAATTCTGGACTGGCGAGGCGACAGCAGAACACAAGACGAGGAGAGCGAGGCGAGGCGAGGCAAGATAAGACGGAACAAAACAGAGGCGACTGGCGAGGTTCGATGAGAAACGAGAAGGGCGGAGCTAGTTATCGTGGCCGGAAGAAATTCGGTGCCCTATTGGATTCGGATTCTCCTACTTCCTCTTGTGCTGAAATGGACGTTTATAATCAGCGAGAAAGCTCCGGCGAGTATTCCCCCAGTGGTATGTCCGGGGAAATTCTGGCGTATTATGATAATTCGCCGTCGCCGGCGAGAACCGACGGCTCGCCGTGTCCAATGTCGCCATGGGATCAGTCATCTCCGTACACAAAATCCCCATGGATAGTACCACCGGGTTTAACTTATTTCGACGAGAATCTTTCTCGCAACGGCCTCATCGGCTCTCTGGTAAGAGAAGATGGCCACGTATATTCACTAGCCGTTTCCGGAGATTTGTTATACACGGGATCCGACAGCAAGAATATTCGTGTTTGGAAGAATTTGAAGGAATTCACCGGTTTCAAATCAAACAGTGGGTTGGTAAAAGCCATTGTAGTCTGCGGCGACAGGATCTTTTCAGGCCACCAAGACGGGAAGATCCGAGTATGGAAGCTTTCGCCTTCGCCAAAGAATTCGACTAATCATAAGCGGATCGGAAGCTTACCGTCGTTCAAAGACTCCATCAAAAACTCGATGAGCCCAAAGAATTACTTTCAGGCCAGCCGCCACCGGAACGTTCTTCGAATAAAGCATTTCGATGCAGTTTCATGCATGAGCTTAAACAAAGAGCAAGGGCTTTTATACTCAGGGTCGTGGGATAAATCAGTGAAGGTGTGGCGCATTGCCAATTGGGAATTCTTGGAGTCAATCCCTGCCCATGAAGACGCCGTGAATTCCGTCGTTTCCGGTTTGGATAGTTTTCTTTTTACGGGATCTGCCGACGGGACGGTGAAGGTATGGCGAAGGGAGTTGCAAGGGAGAACGACGAAACATTTTTTAGTTCAGGTGTTGCTGAAGCAGGAGAGTGCGGTTACAGCATTGGCAGTGAACCGTTCATCGGCGGTGGTTTACTGCGGATCATCTGATGGGTTGGTGACTTTTTGGGACGGAGAGAAGCTTTTTTCGAACGGGGGGACTCTTCGGGGGCACAAGTTAGCGGTTCTGTGCTTGTCCACGGCAGGGAGCTTGGTTTTCAGTGGGTCTGCTGATAAGAATATCTGCGTGTGGAAGAGGGAAGAGGGAAGTGGTTCCCACACTTGCTTATCGGTTTTCACCGGCCATACAGGGCCGGTGAAGTGCTTGGCCGTTGATGAAGATGAATGGCTGGAGCGGTCGGAGGAAAAAGGAGTAAAGATAGGTGATCGTCGGTGGGTGGTTTACAGCGGAAGCTTGGATAAGTCAGTCAAAGTGTGGCGAGTATCAGAGCAAGTACCGGAGCAGGATCGGCCAAAGCTTTCCTTCCTCGCCGGGTATAATGGGTTAGAGCCAAAATAA | 1518 | 50.4 | MNSGLARRQQNTRRGERGEARQDKTEQNRGDWRGSMRNEKGGASYRGRKKFGALLDSDSPTSSCAEMDVYNQRESSGEYSPSGMSGEILAYYDNSPSPARTDGSPCPMSPWDQSSPYTKSPWIVPPGLTYFDENLSRNGLIGSLVREDGHVYSLAVSGDLLYTGSDSKNIRVWKNLKEFTGFKSNSGLVKAIVVCGDRIFSGHQDGKIRVWKLSPSPKNSTNHKRIGSLPSFKDSIKNSMSPKNYFQASRHRNVLRIKHFDAVSCMSLNKEQGLLYSGSWDKSVKVWRIANWEFLESIPAHEDAVNSVVSGLDSFLFTGSADGTVKVWRRELQGRTTKHFLVQVLLKQESAVTALAVNRSSAVVYCGSSDGLVTFWDGEKLFSNGGTLRGHKLAVLCLSTAGSLVFSGSADKNICVWKREEGSGSHTCLSVFTGHTGPVKCLAVDEDEWLERSEEKGVKIGDRRWVVYSGSLDKSVKVWRVSEQVPEQDRPKLSFLAGYNGLEPK | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 27589234 | 27593444 | + | BLOR19611 | Blo13g00559 | 68954 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo13g00559 | 505 | Gene3D | - | 251 | 336 | IPR015943 | GO:0005515 | |
| Blo13g00559 | 505 | PRINTS | G protein beta WD-40 repeat signature | 316 | 330 | IPR020472 | - | |
| Blo13g00559 | 505 | PRINTS | G protein beta WD-40 repeat signature | 275 | 289 | IPR020472 | - | |
| Blo13g00559 | 505 | PRINTS | G protein beta WD-40 repeat signature | 467 | 481 | IPR020472 | - | |
| Blo13g00559 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 298 | 328 | - | - | |
| Blo13g00559 | 505 | MobiDBLite | consensus disorder prediction | 56 | 82 | - | - | |
| Blo13g00559 | 505 | PANTHER | EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE | 43 | 489 | - | - | |
| Blo13g00559 | 505 | CDD | WD40 | 148 | 480 | - | - | |
| Blo13g00559 | 505 | Gene3D | - | 337 | 499 | IPR015943 | GO:0005515 | |
| Blo13g00559 | 505 | MobiDBLite | consensus disorder prediction | 1 | 112 | - | - | |
| Blo13g00559 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 256 | 289 | - | - | |
| Blo13g00559 | 505 | SUPERFAMILY | WD40 repeat-like | 141 | 485 | IPR036322 | GO:0005515 | |
| Blo13g00559 | 505 | MobiDBLite | consensus disorder prediction | 97 | 112 | - | - | |
| Blo13g00559 | 505 | PANTHER | F-BOX AND WD40 DOMAIN PROTEIN | 43 | 489 | IPR045182 | - | |
| Blo13g00559 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 345 | 377 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | Pfam | WD domain, G-beta repeat | 258 | 287 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | Pfam | WD domain, G-beta repeat | 148 | 174 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | Pfam | WD domain, G-beta repeat | 427 | 479 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | Pfam | WD domain, G-beta repeat | 295 | 328 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | Pfam | WD domain, G-beta repeat | 350 | 377 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | Pfam | WD domain, G-beta repeat | 384 | 418 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | Pfam | WD domain, G-beta repeat | 175 | 212 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 256 | 297 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | SMART | WD40_4 | 250 | 288 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | SMART | WD40_4 | 425 | 480 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | SMART | WD40_4 | 338 | 377 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | SMART | WD40_4 | 291 | 329 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | SMART | WD40_4 | 381 | 418 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | SMART | WD40_4 | 175 | 212 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | SMART | WD40_4 | 137 | 174 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 298 | 328 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 388 | 427 | IPR001680 | GO:0005515 | |
| Blo13g00559 | 505 | Gene3D | - | 133 | 250 | IPR015943 | GO:0005515 | |
| Blo13g00559 | 505 | MobiDBLite | consensus disorder prediction | 10 | 46 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo13g00559 | - | - | - | zju:107435548 | 597.045 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Blo13g00559 | Blo15g00718 | CCT | |
| Blo13g00559 | Blo15g00718 | ECH |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo01g01774 | Blo-Chr1:57457600 | Blo13g00559 | Blo-Chr13:27589234 | 1.72E-73 | dispersed | |
| Blo04g01023 | Blo-Chr4:13666761 | Blo13g00559 | Blo-Chr13:27589234 | 1.15E-162 | dispersed | |
| Blo11g00896 | Blo-Chr11:17954673 | Blo13g00559 | Blo-Chr13:27589234 | 8.46E-34 | dispersed | |
| Blo12g00920 | Blo-Chr12:27372180 | Blo13g00559 | Blo-Chr13:27589234 | 1.22E-177 | dispersed | |
| Blo13g00559 | Blo-Chr13:27589234 | Blo15g00718 | Blo-Chr15:23646177 | 0 | dispersed | |
| Blo13g00559 | Blo-Chr13:27589234 | Blo13g00565 | Blo-Chr13:27718178 | 0 | proximal |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g527 | . | Blo15g00718 | Bda06g01024 | Bda08g01318 | Bpe07g00404 | Bpe12g00071 | . | Bma12g00483 | Cmo19g00652 | Cmo11g01329 | . | . | . | . | Sed11g0992 | . | . | Bhi05g01171 | Tan02g1913 | Cmetu03g1602 | . | Hepe02g0551 | . | . | Cla02g00560 | Cam02g0588 | Cec02g0589 | Cco02g0600 | Clacu02g0586 | Cmu02g0584 | Cre02g0914 | . | . | . | . | . | Csa07g00816 | . | . | . | Blo13g00559 | Bda15g00021 | Bda14g00532 | . | . | . | . | . | . | . | Cma11g01780 | Cma19g00639 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Chy01g00013 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009507 | 6 | 1 | 2 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 2 | 0 | 1 | 2 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 33 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Blo13g00559 | Blo_Chr13 | FPKM | 22.253714 | 23.501593 | 26.436651 | 31.115616 | 10.677739 | 14.062712 | 13.041957 | 32.618126 | 30.443737 | 34.292645 |