Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00560 ATGAAAGCAATGGAGAGCTTGGAGGATCTGATTGAGGAAGTTAAGGTTCGGACACTTTGGTGGGCTTTGTGTATTTTCGGCATTGCCTACTTTTTGACCCATACCAGTAAATCAATGTGGATGAACCTACCAATATCAATTTTATTTGTTTGTGCTCTGCGAATTATTTTCAATGGGGTTGAGTTTCGTTGGAAGGTGACAGCAGTTCGTCCGCAAACATACTTATCTCATTTGGAAAAGAAACAGCTATCTGTGAATGATTCACGGCTTGTTTCTGGAACTTTACCCTCAAGATGGAAAAGAAAAATTGATTCGCCGATTGTGGAAGCAGCATTGACAGATTTTATTGATAAAATATTAAAGGATTTTGTGGTAGACTTGTGGTATTCAGAGATAACCCCAGACACAGAATTCCCAGAACAAATACGCTCAATAATTATGGATGCTCTTGGTGAAGTCACCGGGAGAGTTAAAGAGATGAACCTCGTCGATTTGCTTATGAGGGACCTAGTTGATTTAGTTGGGGATCATTTGGACCTTTTTAGAAGAAACCAAGCTGCAATAGGGGTTGATGTAATGGGAATACTGTCATCTGAAGAAAGGGATGAAAGGCTGAAACACCATCTGATGACTTCCAGGGAGCTGCATCCTGCATTATTATCTCCTGAGAGTGAGTACAAGGTCCTTCAACGACTTACTAGTGGAGTATTGGCAGTAGTGCTAAGACCACGAGAAACTCAATGTCCTGTTATTCGTTCAATTGCTCGAGAACTATTAACCTCTTTGGTAATGCAACCTATCATGAATTTTGCTAGTCCTGGGGATATCAACGAGTTGATTGAATATGTTTTGCTTGCCACTAAAGTTGATAGCGATGGTAAAGAAACTGGTAATTACCAGTCTAAAGATGCAGTGGGAATTGATCATAATCATTCTATAACTGTTTGTGATGATAATTCAAACAAACGAAAGTATTCTTCTATTAATCAAGGTGCAGATTCCGTGTTTCCTGAAGTGGACAATCAGATAGAGAAACATCCCAGCTATGCTGAGTGGGCGCGGATGCTTGATGTGGCTACCCAGAGGAGAACTGAAGTTCTAATGCCTGAAAATCTGGAAAACATGTGGACAAAAGGAAGGAATTATAAGAAGAAAGAGAACAAGAGTGTTAAGCAAGGAGTTCAGGAATCTATAAGTAAGGACTTGACTGTAAAGAGTGGCTTGAATAAAAGAGATCTAAATAAAGGCATTTTGACCACCTTGAATAGTGCAACAGGAATTGAAACAGACCTTGGTCCGATGTCAATGACTGGAAAAAGTTTAGTTTCCCAGTTGAGCTCACCAATAAGTTACGGAAACCAAATTGGTATGCTGTCCTCTATAAATCATCAACAGGAATTAGTTATTGACAGGACTCATCTTGATGACGAGTCTGAATCCAACAGAAATAGCGGTAGAACACTTCTCAAAAGATCTAACAGTACTTCTGCTTTGAGAACCGATCCTGGAGCAACGAATACAAGCACAGAAGATGAAGGGACAATTATATCAGAGTTCTACACCCCTAATTTTGGTAGACCTAGTGAAGGTCACCGTGGTAGAAGTGCCTCAGATATGGTAGTCCGAAAGGAAGGACAACTTGTTCCAAAACTCAGATGTCGTGTTATGGGAGCGTACTTTGAGAAACTTGGGTCTAAATCTTTTGCCGTGTATTCAATTGCAGTAACAGATGCAGAAAAAAGAACTTGGTTTGTTAAAAGAAGATACAGGAACTTTGAGCGTCTACATCGATATCTTAAAGATATTCCTAATTATACATTACACTTGCCTCCCAAAAGAATATTCTCATCAAGCACAGAGGACACTTTTGTTCATCAGCGCTGCATTCAGCTTGATAGATATCTGCTGGATCTGTTGTCTATTGCAAATGTTGCTGAACAACATGAAGTATGGGATTTTCTGAGTGCTTCCTCAAAGAATTACTCCTTTGGAAAATCTTCTTCAGTGATGAGAACTCTAGCAGTTAATGTGGACGATGCTGTGGATGACATTGTACGCCAGTTTAAAGGGGTTTCTGACGGATTGATACGCAAAGTTGTTGGTTCATCATCCCCTGCTTTTGATGCCTCTTCTTCAATTTCGGATCAAACATTATCCTTGATTCCAGATGACTTAAATCAACATATTTCTAGACACTATAGTGCAAATGTGGCTAATAGTTATTCTGATAATGAGGAAGATGGAAAAGAACAAAGCAATACTCGCAAAGATGTCAGTGGATGGCATTCAGATACTGAGTTGAACGCCAAAAGTTTTCCACCTAGGGTGGTCAAGCGTTTTGAAGATAATCGAGGCTTACATTCAGATAAAAAACTCAATTCAGGGGTGAAATATGGGATTAGCCAGGAAGGGGTTTCAGTAAACTCGTATGATTTGGAAGATGTTGGTGTACCGCCTGAGTGGACCCCACCTAATGTTAGTGTGCCTTTGCTGAATTTGGTTGATAAAATATTTCAGCTAAACAGAAGAGGCTGGATAAGAAGACAGGTCCTTTGGATATCGAAACAGATTTTGCAGTTAATAATGGAGGATGCCCTGGACGATTGGCTTTTGAGACAGATACATTGGCTTCGAAGAGATGATATCATTGCTCAAGGCATTCGATGGGTTCAAGATGTTTTGTGGCCTGATGGGATTTTCTTTCTAAGATTGAGGGATGCTCAATGTAACGGTGATGATACTCAACATGATAAAAGTTCGTTTCAAACTACAAGTCAAACTGGTGGCAGCAAGTTCTCTAAGCCGGGGTCTTTTGAGGAGCAGCTTGAGGCTGCTCGAAGAGCTAGCGCAGTCAAGAAATTACTGTTTGGTGGAGCTCCTACGACCTTGGTGAGCTTGATAGGACACAAACAGTACAAACGTTGTGCAAAAGATATTTACTACTTTACCCAATCTACCGTTTGCGTGAAACAACTCGCCTTTGGAATACTTGAACTCTTACTCATCTCAATTTTTCCCGAGCTTCGGAATCTAGTTTTGGAAGTACACGAGAAGATGCATAGAGAATTCCAGACAATTTTCGTGAGGAAGATCAGATATGAGCTTTCTGCAGTTGCTACTCTTGCCGTTCCTGCTGGTCATGTATGGCATGTAGGACTAAGAAAAGCTGATAACAGATACGAAGGGAATTCTTCTTTTGTTGTTTATATATTCAATCTCAGTACGTCCGGGATAAACTATCAATCTGCCAATCTCAATGAGCTCGGACCATCTTCTCAAAATGAGGAGGAAGTAGAAATGCGCTGTAAGTTTTATAGAAGTGCTTCTGCGAGAAAAAGGACGGTGACCGCCGTAGAACGAGAAAGGGTCGGCAATGCATCCAAAGCTTTTGAGCCCGTTAATCCCTTCTGTCGAGTTGTTTTGAGACCTTCGTACCTATATCGAGGTTGTATTATGTACTTGCCGTCGTGCTTTGCTGAAAAGAACCTGAGTGGGGTTTCAGGATTCATCAAACTTCAGATTTCGGACGGAAGACAGTGGTCGGTTCGATGTCTTAATAAAGGAGGTAAAACGAAGTTGAGTCAAGGTTGGTACGAATTTTGCTTAGAAAATAGTTTGGGCGAAGGAGATGTTTGTGTGTTTGAGTTGATCAAGGCCAGAGAAATTGTGCTAAAAGTTACCATGTTTCGAGCCGTTGAAGAAGCTCGATTTGCAAACCCGGCTCCATTGCAGAGCTTCGGCCTTGGACCAGAAATTGTGTGGACCAGTCCTGACTTCTTGGCCTCTGCTACATTCTCTCCAGCCATGGCCGCCGCTCCTTCTGTTGCACCTAGAAGACAGAAAAATACCAATATCCACTACATCGCCGGGCTGAATTCATTCGGAGGGCTGAAAGCACCCACCAAAGTGGCCTCAATGGGGGTTCCTGTGTGCACCCACCAATCTTTTGCAAAGATGGCGAGCTCTCTGAAATACCCATCGAATGGAAAAGGAAGAAGTGGAGGTGGGGCGCTTGCTTCTACCTGTAACACGGCTGGTGAAATATTCCAGATTGCAGCCATTATTAATGGGCTTGTTCTTGTTGGAGTGGCCGTGGGTTTTGTTCTTCTTCGAATCGAAGCATTTGTTGAGGAGTCTGAGTGA 4143 41.73 MKAMESLEDLIEEVKVRTLWWALCIFGIAYFLTHTSKSMWMNLPISILFVCALRIIFNGVEFRWKVTAVRPQTYLSHLEKKQLSVNDSRLVSGTLPSRWKRKIDSPIVEAALTDFIDKILKDFVVDLWYSEITPDTEFPEQIRSIIMDALGEVTGRVKEMNLVDLLMRDLVDLVGDHLDLFRRNQAAIGVDVMGILSSEERDERLKHHLMTSRELHPALLSPESEYKVLQRLTSGVLAVVLRPRETQCPVIRSIARELLTSLVMQPIMNFASPGDINELIEYVLLATKVDSDGKETGNYQSKDAVGIDHNHSITVCDDNSNKRKYSSINQGADSVFPEVDNQIEKHPSYAEWARMLDVATQRRTEVLMPENLENMWTKGRNYKKKENKSVKQGVQESISKDLTVKSGLNKRDLNKGILTTLNSATGIETDLGPMSMTGKSLVSQLSSPISYGNQIGMLSSINHQQELVIDRTHLDDESESNRNSGRTLLKRSNSTSALRTDPGATNTSTEDEGTIISEFYTPNFGRPSEGHRGRSASDMVVRKEGQLVPKLRCRVMGAYFEKLGSKSFAVYSIAVTDAEKRTWFVKRRYRNFERLHRYLKDIPNYTLHLPPKRIFSSSTEDTFVHQRCIQLDRYLLDLLSIANVAEQHEVWDFLSASSKNYSFGKSSSVMRTLAVNVDDAVDDIVRQFKGVSDGLIRKVVGSSSPAFDASSSISDQTLSLIPDDLNQHISRHYSANVANSYSDNEEDGKEQSNTRKDVSGWHSDTELNAKSFPPRVVKRFEDNRGLHSDKKLNSGVKYGISQEGVSVNSYDLEDVGVPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDALDDWLLRQIHWLRRDDIIAQGIRWVQDVLWPDGIFFLRLRDAQCNGDDTQHDKSSFQTTSQTGGSKFSKPGSFEEQLEAARRASAVKKLLFGGAPTTLVSLIGHKQYKRCAKDIYYFTQSTVCVKQLAFGILELLLISIFPELRNLVLEVHEKMHREFQTIFVRKIRYELSAVATLAVPAGHVWHVGLRKADNRYEGNSSFVVYIFNLSTSGINYQSANLNELGPSSQNEEEVEMRCKFYRSASARKRTVTAVERERVGNASKAFEPVNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQISDGRQWSVRCLNKGGKTKLSQGWYEFCLENSLGEGDVCVFELIKAREIVLKVTMFRAVEEARFANPAPLQSFGLGPEIVWTSPDFLASATFSPAMAAAPSVAPRRQKNTNIHYIAGLNSFGGLKAPTKVASMGVPVCTHQSFAKMASSLKYPSNGKGRSGGGALASTCNTAGEIFQIAAIINGLVLVGVAVGFVLLRIEAFVEESE 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27599842 27612938 - BLOR19612 Blo13g00560 68955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00560 1380 MobiDBLite consensus disorder prediction 736 767 - -
Blo13g00560 1380 ProSiteProfiles PXA domain profile. 105 288 IPR003114 -
Blo13g00560 1380 SMART PXA_3 105 290 IPR003114 -
Blo13g00560 1380 MobiDBLite consensus disorder prediction 519 538 - -
Blo13g00560 1380 Gene3D - 552 666 IPR036871 GO:0035091
Blo13g00560 1380 Pfam B3 DNA binding domain 1140 1231 IPR003340 GO:0003677
Blo13g00560 1380 SUPERFAMILY DNA-binding pseudobarrel domain 1131 1230 IPR015300 -
Blo13g00560 1380 SMART PX_2 547 657 IPR001683 GO:0035091
Blo13g00560 1380 Pfam PetM family of cytochrome b6f complex subunit 7 1346 1373 IPR012595 GO:0009512
Blo13g00560 1380 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 6 1021 - -
Blo13g00560 1380 CDD B3_DNA 1135 1230 IPR003340 GO:0003677
Blo13g00560 1380 Pfam PX domain 580 656 IPR001683 GO:0035091
Blo13g00560 1380 ProSiteProfiles PX domain profile. 549 661 IPR001683 GO:0035091
Blo13g00560 1380 MobiDBLite consensus disorder prediction 743 763 - -
Blo13g00560 1380 MobiDBLite consensus disorder prediction 914 934 - -
Blo13g00560 1380 MobiDBLite consensus disorder prediction 913 935 - -
Blo13g00560 1380 SMART B3_2 1137 1232 IPR003340 GO:0003677
Blo13g00560 1380 Hamap Cytochrome b6-f complex subunit 7 [petM]. 1344 1377 IPR012595 GO:0009512
Blo13g00560 1380 Pfam Sorting nexin C terminal 845 986 IPR013937 -
Blo13g00560 1380 MobiDBLite consensus disorder prediction 472 512 - -
Blo13g00560 1380 PANTHER PX SERINE/THREONINE KINASE PXK 6 1021 - -
Blo13g00560 1380 CDD PX_SNX19_like_plant 551 656 - -
Blo13g00560 1380 SUPERFAMILY PX domain 551 658 IPR036871 GO:0035091
Blo13g00560 1380 MobiDBLite consensus disorder prediction 485 512 - -
Blo13g00560 1380 SUPERFAMILY PetM subunit of the cytochrome b6f complex 1345 1377 - -
Blo13g00560 1380 Gene3D - 1114 1234 IPR015300 -
Blo13g00560 1380 ProSiteProfiles B3 DNA-binding domain profile. 1137 1232 IPR003340 GO:0003677
Blo13g00560 1380 Pfam PXA domain 105 282 IPR003114 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00496 Blo13g00560 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00095 Blo-Chr5:878249 Blo13g00560 Blo-Chr13:27599842 4.18E-63 dispersed
Blo05g00588 Blo-Chr5:14876478 Blo13g00560 Blo-Chr13:27599842 2.15E-19 dispersed
Blo06g00689 Blo-Chr6:30031552 Blo13g00560 Blo-Chr13:27599842 1.77E-62 dispersed
Blo13g00560 Blo-Chr13:27599842 Blo05g00223 Blo-Chr5:2469055 2.43E-09 dispersed
Blo13g00560 Blo-Chr13:27599842 Blo04g00496 Blo-Chr4:4134274 3.72E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13152 PF02194 PXA 1.20E-37 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00560 K17925 - qsu:111987089 1315.06