Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00560 ATGAAAGCAATGGAGAGCTTGGAGGATCTGATTGAGGAAGTTAAGGTTCGGACACTTTGGTGGGCTTTGTGTATTTTCGGCATTGCCTACTTTTTGACCCATACCAGTAAATCAATGTGGATGAACCTACCAATATCAATTTTATTTGTTTGTGCTCTGCGAATTATTTTCAATGGGGTTGAGTTTCGTTGGAAGGTGACAGCAGTTCGTCCGCAAACATACTTATCTCATTTGGAAAAGAAACAGCTATCTGTGAATGATTCACGGCTTGTTTCTGGAACTTTACCCTCAAGATGGAAAAGAAAAATTGATTCGCCGATTGTGGAAGCAGCATTGACAGATTTTATTGATAAAATATTAAAGGATTTTGTGGTAGACTTGTGGTATTCAGAGATAACCCCAGACACAGAATTCCCAGAACAAATACGCTCAATAATTATGGATGCTCTTGGTGAAGTCACCGGGAGAGTTAAAGAGATGAACCTCGTCGATTTGCTTATGAGGGACCTAGTTGATTTAGTTGGGGATCATTTGGACCTTTTTAGAAGAAACCAAGCTGCAATAGGGGTTGATGTAATGGGAATACTGTCATCTGAAGAAAGGGATGAAAGGCTGAAACACCATCTGATGACTTCCAGGGAGCTGCATCCTGCATTATTATCTCCTGAGAGTGAGTACAAGGTCCTTCAACGACTTACTAGTGGAGTATTGGCAGTAGTGCTAAGACCACGAGAAACTCAATGTCCTGTTATTCGTTCAATTGCTCGAGAACTATTAACCTCTTTGGTAATGCAACCTATCATGAATTTTGCTAGTCCTGGGGATATCAACGAGTTGATTGAATATGTTTTGCTTGCCACTAAAGTTGATAGCGATGGTAAAGAAACTGGTAATTACCAGTCTAAAGATGCAGTGGGAATTGATCATAATCATTCTATAACTGTTTGTGATGATAATTCAAACAAACGAAAGTATTCTTCTATTAATCAAGGTGCAGATTCCGTGTTTCCTGAAGTGGACAATCAGATAGAGAAACATCCCAGCTATGCTGAGTGGGCGCGGATGCTTGATGTGGCTACCCAGAGGAGAACTGAAGTTCTAATGCCTGAAAATCTGGAAAACATGTGGACAAAAGGAAGGAATTATAAGAAGAAAGAGAACAAGAGTGTTAAGCAAGGAGTTCAGGAATCTATAAGTAAGGACTTGACTGTAAAGAGTGGCTTGAATAAAAGAGATCTAAATAAAGGCATTTTGACCACCTTGAATAGTGCAACAGGAATTGAAACAGACCTTGGTCCGATGTCAATGACTGGAAAAAGTTTAGTTTCCCAGTTGAGCTCACCAATAAGTTACGGAAACCAAATTGGTATGCTGTCCTCTATAAATCATCAACAGGAATTAGTTATTGACAGGACTCATCTTGATGACGAGTCTGAATCCAACAGAAATAGCGGTAGAACACTTCTCAAAAGATCTAACAGTACTTCTGCTTTGAGAACCGATCCTGGAGCAACGAATACAAGCACAGAAGATGAAGGGACAATTATATCAGAGTTCTACACCCCTAATTTTGGTAGACCTAGTGAAGGTCACCGTGGTAGAAGTGCCTCAGATATGGTAGTCCGAAAGGAAGGACAACTTGTTCCAAAACTCAGATGTCGTGTTATGGGAGCGTACTTTGAGAAACTTGGGTCTAAATCTTTTGCCGTGTATTCAATTGCAGTAACAGATGCAGAAAAAAGAACTTGGTTTGTTAAAAGAAGATACAGGAACTTTGAGCGTCTACATCGATATCTTAAAGATATTCCTAATTATACATTACACTTGCCTCCCAAAAGAATATTCTCATCAAGCACAGAGGACACTTTTGTTCATCAGCGCTGCATTCAGCTTGATAGATATCTGCTGGATCTGTTGTCTATTGCAAATGTTGCTGAACAACATGAAGTATGGGATTTTCTGAGTGCTTCCTCAAAGAATTACTCCTTTGGAAAATCTTCTTCAGTGATGAGAACTCTAGCAGTTAATGTGGACGATGCTGTGGATGACATTGTACGCCAGTTTAAAGGGGTTTCTGACGGATTGATACGCAAAGTTGTTGGTTCATCATCCCCTGCTTTTGATGCCTCTTCTTCAATTTCGGATCAAACATTATCCTTGATTCCAGATGACTTAAATCAACATATTTCTAGACACTATAGTGCAAATGTGGCTAATAGTTATTCTGATAATGAGGAAGATGGAAAAGAACAAAGCAATACTCGCAAAGATGTCAGTGGATGGCATTCAGATACTGAGTTGAACGCCAAAAGTTTTCCACCTAGGGTGGTCAAGCGTTTTGAAGATAATCGAGGCTTACATTCAGATAAAAAACTCAATTCAGGGGTGAAATATGGGATTAGCCAGGAAGGGGTTTCAGTAAACTCGTATGATTTGGAAGATGTTGGTGTACCGCCTGAGTGGACCCCACCTAATGTTAGTGTGCCTTTGCTGAATTTGGTTGATAAAATATTTCAGCTAAACAGAAGAGGCTGGATAAGAAGACAGGTCCTTTGGATATCGAAACAGATTTTGCAGTTAATAATGGAGGATGCCCTGGACGATTGGCTTTTGAGACAGATACATTGGCTTCGAAGAGATGATATCATTGCTCAAGGCATTCGATGGGTTCAAGATGTTTTGTGGCCTGATGGGATTTTCTTTCTAAGATTGAGGGATGCTCAATGTAACGGTGATGATACTCAACATGATAAAAGTTCGTTTCAAACTACAAGTCAAACTGGTGGCAGCAAGTTCTCTAAGCCGGGGTCTTTTGAGGAGCAGCTTGAGGCTGCTCGAAGAGCTAGCGCAGTCAAGAAATTACTGTTTGGTGGAGCTCCTACGACCTTGGTGAGCTTGATAGGACACAAACAGTACAAACGTTGTGCAAAAGATATTTACTACTTTACCCAATCTACCGTTTGCGTGAAACAACTCGCCTTTGGAATACTTGAACTCTTACTCATCTCAATTTTTCCCGAGCTTCGGAATCTAGTTTTGGAAGTACACGAGAAGATGCATAGAGAATTCCAGACAATTTTCGTGAGGAAGATCAGATATGAGCTTTCTGCAGTTGCTACTCTTGCCGTTCCTGCTGGTCATGTATGGCATGTAGGACTAAGAAAAGCTGATAACAGATACGAAGGGAATTCTTCTTTTGTTGTTTATATATTCAATCTCAGTACGTCCGGGATAAACTATCAATCTGCCAATCTCAATGAGCTCGGACCATCTTCTCAAAATGAGGAGGAAGTAGAAATGCGCTGTAAGTTTTATAGAAGTGCTTCTGCGAGAAAAAGGACGGTGACCGCCGTAGAACGAGAAAGGGTCGGCAATGCATCCAAAGCTTTTGAGCCCGTTAATCCCTTCTGTCGAGTTGTTTTGAGACCTTCGTACCTATATCGAGGTTGTATTATGTACTTGCCGTCGTGCTTTGCTGAAAAGAACCTGAGTGGGGTTTCAGGATTCATCAAACTTCAGATTTCGGACGGAAGACAGTGGTCGGTTCGATGTCTTAATAAAGGAGGTAAAACGAAGTTGAGTCAAGGTTGGTACGAATTTTGCTTAGAAAATAGTTTGGGCGAAGGAGATGTTTGTGTGTTTGAGTTGATCAAGGCCAGAGAAATTGTGCTAAAAGTTACCATGTTTCGAGCCGTTGAAGAAGCTCGATTTGCAAACCCGGCTCCATTGCAGAGCTTCGGCCTTGGACCAGAAATTGTGTGGACCAGTCCTGACTTCTTGGCCTCTGCTACATTCTCTCCAGCCATGGCCGCCGCTCCTTCTGTTGCACCTAGAAGACAGAAAAATACCAATATCCACTACATCGCCGGGCTGAATTCATTCGGAGGGCTGAAAGCACCCACCAAAGTGGCCTCAATGGGGGTTCCTGTGTGCACCCACCAATCTTTTGCAAAGATGGCGAGCTCTCTGAAATACCCATCGAATGGAAAAGGAAGAAGTGGAGGTGGGGCGCTTGCTTCTACCTGTAACACGGCTGGTGAAATATTCCAGATTGCAGCCATTATTAATGGGCTTGTTCTTGTTGGAGTGGCCGTGGGTTTTGTTCTTCTTCGAATCGAAGCATTTGTTGAGGAGTCTGAGTGA 4143 41.73 MKAMESLEDLIEEVKVRTLWWALCIFGIAYFLTHTSKSMWMNLPISILFVCALRIIFNGVEFRWKVTAVRPQTYLSHLEKKQLSVNDSRLVSGTLPSRWKRKIDSPIVEAALTDFIDKILKDFVVDLWYSEITPDTEFPEQIRSIIMDALGEVTGRVKEMNLVDLLMRDLVDLVGDHLDLFRRNQAAIGVDVMGILSSEERDERLKHHLMTSRELHPALLSPESEYKVLQRLTSGVLAVVLRPRETQCPVIRSIARELLTSLVMQPIMNFASPGDINELIEYVLLATKVDSDGKETGNYQSKDAVGIDHNHSITVCDDNSNKRKYSSINQGADSVFPEVDNQIEKHPSYAEWARMLDVATQRRTEVLMPENLENMWTKGRNYKKKENKSVKQGVQESISKDLTVKSGLNKRDLNKGILTTLNSATGIETDLGPMSMTGKSLVSQLSSPISYGNQIGMLSSINHQQELVIDRTHLDDESESNRNSGRTLLKRSNSTSALRTDPGATNTSTEDEGTIISEFYTPNFGRPSEGHRGRSASDMVVRKEGQLVPKLRCRVMGAYFEKLGSKSFAVYSIAVTDAEKRTWFVKRRYRNFERLHRYLKDIPNYTLHLPPKRIFSSSTEDTFVHQRCIQLDRYLLDLLSIANVAEQHEVWDFLSASSKNYSFGKSSSVMRTLAVNVDDAVDDIVRQFKGVSDGLIRKVVGSSSPAFDASSSISDQTLSLIPDDLNQHISRHYSANVANSYSDNEEDGKEQSNTRKDVSGWHSDTELNAKSFPPRVVKRFEDNRGLHSDKKLNSGVKYGISQEGVSVNSYDLEDVGVPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDALDDWLLRQIHWLRRDDIIAQGIRWVQDVLWPDGIFFLRLRDAQCNGDDTQHDKSSFQTTSQTGGSKFSKPGSFEEQLEAARRASAVKKLLFGGAPTTLVSLIGHKQYKRCAKDIYYFTQSTVCVKQLAFGILELLLISIFPELRNLVLEVHEKMHREFQTIFVRKIRYELSAVATLAVPAGHVWHVGLRKADNRYEGNSSFVVYIFNLSTSGINYQSANLNELGPSSQNEEEVEMRCKFYRSASARKRTVTAVERERVGNASKAFEPVNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQISDGRQWSVRCLNKGGKTKLSQGWYEFCLENSLGEGDVCVFELIKAREIVLKVTMFRAVEEARFANPAPLQSFGLGPEIVWTSPDFLASATFSPAMAAAPSVAPRRQKNTNIHYIAGLNSFGGLKAPTKVASMGVPVCTHQSFAKMASSLKYPSNGKGRSGGGALASTCNTAGEIFQIAAIINGLVLVGVAVGFVLLRIEAFVEESE 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27599842 27612938 - BLOR19612 Blo13g00560 68955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00560 1380 MobiDBLite consensus disorder prediction 736 767 - -
Blo13g00560 1380 ProSiteProfiles PXA domain profile. 105 288 IPR003114 -
Blo13g00560 1380 SMART PXA_3 105 290 IPR003114 -
Blo13g00560 1380 MobiDBLite consensus disorder prediction 519 538 - -
Blo13g00560 1380 Gene3D - 552 666 IPR036871 GO:0035091
Blo13g00560 1380 Pfam B3 DNA binding domain 1140 1231 IPR003340 GO:0003677
Blo13g00560 1380 SUPERFAMILY DNA-binding pseudobarrel domain 1131 1230 IPR015300 -
Blo13g00560 1380 SMART PX_2 547 657 IPR001683 GO:0035091
Blo13g00560 1380 Pfam PetM family of cytochrome b6f complex subunit 7 1346 1373 IPR012595 GO:0009512
Blo13g00560 1380 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 6 1021 - -
Blo13g00560 1380 CDD B3_DNA 1135 1230 IPR003340 GO:0003677
Blo13g00560 1380 Pfam PX domain 580 656 IPR001683 GO:0035091
Blo13g00560 1380 ProSiteProfiles PX domain profile. 549 661 IPR001683 GO:0035091
Blo13g00560 1380 MobiDBLite consensus disorder prediction 743 763 - -
Blo13g00560 1380 MobiDBLite consensus disorder prediction 914 934 - -
Blo13g00560 1380 MobiDBLite consensus disorder prediction 913 935 - -
Blo13g00560 1380 SMART B3_2 1137 1232 IPR003340 GO:0003677
Blo13g00560 1380 Hamap Cytochrome b6-f complex subunit 7 [petM]. 1344 1377 IPR012595 GO:0009512
Blo13g00560 1380 Pfam Sorting nexin C terminal 845 986 IPR013937 -
Blo13g00560 1380 MobiDBLite consensus disorder prediction 472 512 - -
Blo13g00560 1380 PANTHER PX SERINE/THREONINE KINASE PXK 6 1021 - -
Blo13g00560 1380 CDD PX_SNX19_like_plant 551 656 - -
Blo13g00560 1380 SUPERFAMILY PX domain 551 658 IPR036871 GO:0035091
Blo13g00560 1380 MobiDBLite consensus disorder prediction 485 512 - -
Blo13g00560 1380 SUPERFAMILY PetM subunit of the cytochrome b6f complex 1345 1377 - -
Blo13g00560 1380 Gene3D - 1114 1234 IPR015300 -
Blo13g00560 1380 ProSiteProfiles B3 DNA-binding domain profile. 1137 1232 IPR003340 GO:0003677
Blo13g00560 1380 Pfam PXA domain 105 282 IPR003114 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00560 K17925 SNX13; sorting nexin-13 - qsu:111987089 1315.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00496 Blo13g00560 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00095 Blo-Chr5:878249 Blo13g00560 Blo-Chr13:27599842 4.18E-63 dispersed
Blo05g00588 Blo-Chr5:14876478 Blo13g00560 Blo-Chr13:27599842 2.15E-19 dispersed
Blo06g00689 Blo-Chr6:30031552 Blo13g00560 Blo-Chr13:27599842 1.77E-62 dispersed
Blo13g00560 Blo-Chr13:27599842 Blo05g00223 Blo-Chr5:2469055 2.43E-09 dispersed
Blo13g00560 Blo-Chr13:27599842 Blo04g00496 Blo-Chr4:4134274 3.72E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g506 . . . . . . Bma05g00507 . . . Cma02g00430 Cma20g00883 Car02g00285 Car20g00761 . . . . . . . . . . . . . . . . . Cone12ag1121 Cone8ag1166 Cone3ag1121 . Lsi10g00600 . Chy11g00424 . Blo04g00496 Blo13g00560 . . Bpe15g00884 . Bma03g00530 . Sed01g0327 Cmo02g00432 Cmo20g00891 . . . . . Cpe05g01232 Bhi10g02065 Tan05g1371 Cmetu11g0349 . Hepe08g1052 . . Cla09g01731 Cam09g1826 Cec09g1885 Cco09g1978 . . Cre01g0683 . Csa02g01212 . Cme11g00493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00496 BCT 185 332 REM Transcription Factor Family AT1G49480 71.6 1.4e-54 209.9
Blo13g00560 BCT 1087 1233 REM Transcription Factor Family AT1G49480 68.0 7.2e-51 197.6
Blo12g00794 BCT 1 693 REM Transcription Factor Family AT2G24630 77.3 0.0e+00 1089.3
Blo01g01718 . 1 693 REM Transcription Factor Family AT2G24630 76.7 0.0e+00 1080.1
Blo12g00999 . 1 709 REM Transcription Factor Family AT2G24630 65.0 1.8e-265 912.1
Blo01g01484 BCT 1 706 REM Transcription Factor Family AT2G24630 64.8 6.7e-265 910.2
Blo05g00411 . 5 690 REM Transcription Factor Family AT2G24630 62.5 1.5e-245 845.9
Blo12g00794 BCT 1 693 REM Transcription Factor Family AT2G24630 77.3 0.0e+00 1089.3
Blo01g01718 . 1 693 REM Transcription Factor Family AT2G24630 76.7 0.0e+00 1080.1
Blo12g00999 . 1 709 REM Transcription Factor Family AT2G24630 65.0 1.8e-265 912.1
Blo01g01484 BCT 1 706 REM Transcription Factor Family AT2G24630 64.8 6.7e-265 910.2
Blo05g00411 . 5 690 REM Transcription Factor Family AT2G24630 62.5 1.5e-245 845.9
Blo12g00794 BCT 1 693 REM Transcription Factor Family AT2G24630 77.3 0.0e+00 1089.3
Blo01g01718 . 1 693 REM Transcription Factor Family AT2G24630 76.7 0.0e+00 1080.1
Blo12g00999 . 1 709 REM Transcription Factor Family AT2G24630 65.0 1.8e-265 912.1
Blo01g01484 BCT 1 706 REM Transcription Factor Family AT2G24630 64.8 6.7e-265 910.2
Blo05g00411 . 5 690 REM Transcription Factor Family AT2G24630 62.5 1.5e-245 845.9
Blo04g00496 BCT 185 332 REM Transcription Factor Family AT1G49480 71.6 1.4e-54 209.9
Blo13g00560 BCT 1087 1233 REM Transcription Factor Family AT1G49480 68.0 7.2e-51 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13152 PF02194 PXA 1.20E-37 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00560 Blo_Chr13 FPKM 17.378363 18.918383 7.967144 9.307771 16.865158 14.377544 16.218086 12.040689 13.864941 11.995116