Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00581 ATGGCGTCTCGCAGTCGCCGGCTCGCCGATGGGAAAGATCTGAAATGGCAAGTGGACGGTGAGTCTGTGAAGAATCGGTTTCACTTCAGGCTGTGGATACTGGACGCAGCGAGATCTGGTAGTGGGAGACAAGGACTCCACTCGAGTCGAGATCTGGTTGACGCAGCAAAGGCTCTCCAGCTTCGCAATCTCTTCCTCGGGGCTCAGGGACTGGAGAAGCCCTGCCTCAACTTAGCTGGGAAATCGGGTGGGCTCGGTCTACCCGGTTTCCCATTGTGCAACCTGACAACCGAACCGAGCTTTCTCGGTTCAGCTCGGTTTGGGCATAACCTCGGTTTTTTCACCTTTACAACCGAACAGAACCGTGCAATTTACGCTGATGAAGAAGCTGCTGGAGAGGTTGCTAGCGGGGCTGCTAGCGGGTATGCTGCTAGCAAGGCTGTTGGAGGGTTGCTAGCGGGGCTACTAGCAGGATCTGATGGTGATTTTCGACTTGTTCTTGAAGTCATTGGAGCAAACAAACACAATGGAGAGAAATTCACTTCGATTTTGGCCTTGGTCGAAGTCTTGTCGATGCTTGCTGTTTTCGTTGATGTTGGCTGCACCTTTGCTCGGGCTGGCTACGGTTATCAGCAACAAATTGTTCCTGGCATTAGGCCTGGTGGGGCTTCGATGCCAAACTTTTTTGTGCCAATGGTTCAACAGGGTCCGCAAGGACATCGCCCTGGTGGAAGACGGGCTGGGGCTCTCCAGCAAACCCAACAGCCTGTTCCTCTAATGCACCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGGACGGGGCGCGCCTGATGTTCCTATGCCTAGCATTGCTGGAGGCATGTTTTCTGTTCCATATGACATGAATGGCATGCCTCTGCGTGATGCAGCTCTCTCTCAGCCTATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTTCTTTAGAACAGCAGAGAACAATGTTGGGAGAGAATCTTTACCCACTCGTGGAGCAGCTTGAGCCTGAGAATGCCGCTAAAGTGACTGGCATGCTTCTCGAAATGGATCAGACGGAGGTTTTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCTAAAGTGGCAGAGGCTATGGAGGTTCTGAGAAATGTTGCTCAGCAGCAGCAGGTTGGAAATGCAGCTGATCAGTTGGTCTCCTTATCCCTCAACGACAACCTTGATTCCTGA 1239 52.22 MASRSRRLADGKDLKWQVDGESVKNRFHFRLWILDAARSGSGRQGLHSSRDLVDAAKALQLRNLFLGAQGLEKPCLNLAGKSGGLGLPGFPLCNLTTEPSFLGSARFGHNLGFFTFTTEQNRAIYADEEAAGEVASGAASGYAASKAVGGLLAGLLAGSDGDFRLVLEVIGANKHNGEKFTSILALVEVLSMLAVFVDVGCTFARAGYGYQQQIVPGIRPGGASMPNFFVPMVQQGPQGHRPGGRRAGALQQTQQPVPLMHQQMVPRGRVYRYPPGRGAPDVPMPSIAGGMFSVPYDMNGMPLRDAALSQPIPIGALASALANASLEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQVGNAADQLVSLSLNDNLDS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27928760 27934200 - BLOR19633 Blo13g00581 68976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00581 412 PANTHER POLYADENYLATE-BINDING PROTEIN 205 395 - -
Blo13g00581 412 SMART poly_2 325 388 IPR002004 GO:0003723
Blo13g00581 412 Pfam Poly-adenylate binding protein, unique domain 321 385 IPR002004 GO:0003723
Blo13g00581 412 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 313 390 IPR002004 GO:0003723
Blo13g00581 412 PANTHER RNA BINDING PROTEIN 205 395 - -
Blo13g00581 412 Gene3D - 309 392 - -
Blo13g00581 412 SUPERFAMILY PABC (PABP) domain 254 405 IPR036053 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00276 Blo-Chr9:11957946 Blo13g00581 Blo-Chr13:27928760 5.94E-29 dispersed
Blo13g00581 Blo-Chr13:27928760 Blo17g00873 Blo-Chr17:28792878 1.72E-90 dispersed
Blo13g00581 Blo-Chr13:27928760 Blo04g00479 Blo-Chr4:3968617 3.71E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00581 K13126 - jre:108988866 318.161