Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00582 ATGGCTCAGATTCAACTTCCGCCTCAAAATGTGATGCCCGGCGTTAATCAAGCTGCGATCGGTGGTCAGAACCAGTTTGTGACAACCTCTATGTATGTCGGAGATCTTGACCCGAATGTGACGGATTCGCAGCTATATGACTTGTTCAATCAGGTCGGTCAGGTGGTGTCTGTTCGAGTTTGCAGGGATTTGTCAACTCGACGATCGCTTGGCTATGGTTACGTCAACTATAGCAACCCGCAAGATGGTGCAAGAGCATTGGACGTTCTGAACTTTACACCTATAAATGGGAAGCCCATCCGAGTAATGTATTCTCATCGTGACCCCAGCAGCCGAAAAAGTGGTGCTGGAAATATCTTTATTAAGAATTTAGACAAGGCGATTGATCACAAAGCATTACAAGAGACATTTTCTACATTTGGGAATGTAGTCTCCTGTAAGGTGGCCACAGACCAATCTGGCCAGTCAAAAGGCTATGGATTTGTTCAATTTGACACTGAGGAATCTGCCCAAAAAGCTATTGAGAATTTGAATGGAATGTTATTGAATGACAAGCAAGTTTTTGTTGGACCTTTCCTTCGGAAACAGGAAAGGGATGGTTCTGTTGATAAATCTAAATTCAACAATGTATATCTAAAAAATCTCTCTGATGGTACCACTGAAGAAGACCTGCAAAAGATTTTTGGTGAATTTGGGCCTGTCACAAGTGTTGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGTGAGGTCTGTTGAGGCACTTAATGGAAAGAAATTGGATGGTAAGGAGTGGTATGTTGGGAAAGCCCTGAAGAAATCTGAGAGAGAAGTTGAATTAAAAAGTCAATTTGAACGTAATATGAAAGAGTCAGCGGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGACAGTATCAACGATGATATGCTTAAGGAGTTGTTCTCTGCATTTGGCACAATTACTTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGTAAGGGATCTGGGTTTGTAGCATTCTCCTCTCCTGAAGAGGCTTCTAGGGCTCTCTCGGAGATGAATGGAAAAATGATTGTGTCGAAACCTCTGTATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAGGCTTAGGTTGCAGGCACAATTTTCTCAGATGCAACCAGTAGCAATTCCACACTCTGTTGCTCCCCGAATGCCAATGTATCCACCTAGTGGTCCTGGTCTTGCCCAACAAATATTCTATAATCAGGCTCCACCAGCTATAATTCCTTCACAGGTAGCATAA 1338 42.3 MAQIQLPPQNVMPGVNQAAIGGQNQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDGARALDVLNFTPINGKPIRVMYSHRDPSSRKSGAGNIFIKNLDKAIDHKALQETFSTFGNVVSCKVATDQSGQSKGYGFVQFDTEESAQKAIENLNGMLLNDKQVFVGPFLRKQERDGSVDKSKFNNVYLKNLSDGTTEEDLQKIFGEFGPVTSVAVMRDEDGKSKCFGFVNFENPDDAVRSVEALNGKKLDGKEWYVGKALKKSEREVELKSQFERNMKESADKYQGANLYVKNLDDSINDDMLKELFSAFGTITSCKVMQDPNGISKGSGFVAFSSPEEASRALSEMNGKMIVSKPLYVAPAQRKEERRLRLQAQFSQMQPVAIPHSVAPRMPMYPPSGPGLAQQIFYNQAPPAIIPSQVA 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27941169 27944216 - BLOR19634 Blo13g00582 68977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00582 445 CDD RRM1_I_PABPs 30 109 - -
Blo13g00582 445 Gene3D - 22 118 IPR012677 -
Blo13g00582 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Blo13g00582 445 SMART rrm2_1 118 190 IPR003954 GO:0003676
Blo13g00582 445 SMART rrm2_1 209 281 IPR003954 GO:0003676
Blo13g00582 445 SMART rrm2_1 30 103 IPR003954 GO:0003676
Blo13g00582 445 SMART rrm2_1 312 384 IPR003954 GO:0003676
Blo13g00582 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Blo13g00582 445 CDD RRM3_I_PABPs 207 286 - -
Blo13g00582 445 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Blo13g00582 445 PANTHER RNA BINDING PROTEIN 19 444 - -
Blo13g00582 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Blo13g00582 445 Gene3D - 194 292 IPR012677 -
Blo13g00582 445 Gene3D - 293 399 IPR012677 -
Blo13g00582 445 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 440 IPR006515 GO:0003723
Blo13g00582 445 CDD RRM4_I_PABPs 310 388 - -
Blo13g00582 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Blo13g00582 445 CDD RRM2_I_PABPs 115 191 IPR045305 -
Blo13g00582 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Blo13g00582 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Blo13g00582 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Blo13g00582 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Blo13g00582 445 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Blo13g00582 445 SMART rrm1_1 30 103 IPR000504 GO:0003723
Blo13g00582 445 SMART rrm1_1 118 190 IPR000504 GO:0003723
Blo13g00582 445 SMART rrm1_1 312 384 IPR000504 GO:0003723
Blo13g00582 445 SMART rrm1_1 209 281 IPR000504 GO:0003723
Blo13g00582 445 Gene3D - 119 190 IPR012677 -
Blo13g00582 445 PANTHER POLYADENYLATE-BINDING PROTEIN 2 19 444 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00479 Blo13g00582 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00103 Blo-Chr10:1083185 Blo13g00582 Blo-Chr13:27941169 3.78E-11 dispersed
Blo10g00693 Blo-Chr10:22245975 Blo13g00582 Blo-Chr13:27941169 3.09E-10 dispersed
Blo12g00153 Blo-Chr12:10466145 Blo13g00582 Blo-Chr13:27941169 7.60E-07 dispersed
Blo13g00582 Blo-Chr13:27941169 Blo18g00646 Blo-Chr18:11570892 0 dispersed
Blo13g00582 Blo-Chr13:27941169 Blo04g00479 Blo-Chr4:3968617 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00582 K13126 - zju:107427042 750.355