Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00597 ATGATCTCGATTTTTAGTTCCCTACAAGTATTCTTTTGTGTCAAATGTGTTCTTAGTCTTTCCTTTGCCCTTGATTATATGATGCATGCTCGTTATTCTGAAGAAAGGCTCTGGTTACCAGACCTGGTATCTAGACATGTTTATGAAAATTCTTGTAGCTTTGAAGTTTCATTTGGCTACAAATGCCCCTTTTCCGCAGAGCAGGCTCATCTTCAACAACACCAACAACAATCTCAGCAGCCTGTTATGGGAGTAATTGCAGGTGCAGGTGCAGGTGATTATGCAGCTAATCCTTACCCAAATGCTGCCATGGTGGCTTCTGGAACTCCTCCAAATCAGCCTCCAGCCTCTTTTTCAAATTCACCTCACCAACTTGCATACCAGCAAGCCCAACATTTCCATCACCAACAGCAGCAGCAACAACAACAGCAGCTGCAAATTTTCTGGGCTAACCAAATGCAAGAAATTGAGCAGACAACAGACTTCAAGAGTCACAGCCTTCCGCTTGCTAGGATAAAGAAAATAATGAAAGCCGATGAGGATGTCAGAATGATATCGGCCGAAGCCCCAGTGATATTTGCAAAAGCATGCGAAATGTTCATCCTTGAGCTGACCTTACGCTCTTGGATCCACACAGAAGAGAACAAGAGAAGAACTCTACAGAAAAATGATATTGCAGCTGCCATTTCAAGGACAGACGTCTTCGATTTCTTGGTCGATATAATTCCCAGGGATGAGTTGAAAGAGGAGGGATTGGGAATGAACAAGGCCGCTCTTCCTGTCGATGGCTCCCCTGCTGATATTCCTTATTACTATGTCCCGCCACATCCAGTTGGGCCAGCAGTGTATGCGGCTCAACAGCCCCGGCCACCTATTGCTTTTATGCCATGGCCCCACAGCCAACCTTAG 909 45.43 MISIFSSLQVFFCVKCVLSLSFALDYMMHARYSEERLWLPDLVSRHVYENSCSFEVSFGYKCPFSAEQAHLQQHQQQSQQPVMGVIAGAGAGDYAANPYPNAAMVASGTPPNQPPASFSNSPHQLAYQQAQHFHHQQQQQQQQQLQIFWANQMQEIEQTTDFKSHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGMNKAALPVDGSPADIPYYYVPPHPVGPAVYAAQQPRPPIAFMPWPHSQP 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28401234 28402554 + BLOR19649 Blo13g00597 68992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00597 302 Pfam Core histone H2A/H2B/H3/H4 113 229 IPR007125 GO:0003677
Blo13g00597 302 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 74 277 - -
Blo13g00597 302 Gene3D Histone, subunit A 127 244 IPR009072 GO:0046982
Blo13g00597 302 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 74 277 - -
Blo13g00597 302 SUPERFAMILY Histone-fold 124 238 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00489 Blo-Chr11:4507897 Blo13g00597 Blo-Chr13:28401234 1.04E-63 dispersed
Blo13g00597 Blo-Chr13:28401234 Blo16g00273 Blo-Chr16:6419976 2.13E-61 dispersed
Blo13g00597 Blo-Chr13:28401234 Blo04g00467 Blo-Chr4:3880174 1.15E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13156 PF00125 Histone 4.60E-18 CL0012 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00597 K08066 - tcc:18594891 331.257