Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00601 ATGGCCGCCTCTTCAACGCTTCTCCGATCTGCTGTTAATGCTCCTCTTTTTGAATCCTCCCGTGCCGACCTTTCTTCCTCGCAGAAGATTTCATGCATCAACCTTAACACTTCGAAGCATCGATCGGGTACTTTAGGTTCAAGTGTTTCTAGAGGCGCATATTCCTTACAGTTGAAAAATTTATTGCTCAGGAAAGGTGGAATTAGGAGTATTAAACCGATTAAAGCTACGGCTACAGAGGCACCTCCTGCAGTTCAAAGTAAGTCTTACATTTCTTTGGTCGTTTACAAGCGTTTTGGTCGTATAGGAAGATTGGTGTTACGAGTTGCTATTTCAAGGGATGATATTGATGTGGTGGCAGTTAATGACCCCTTCATTGATGCTAAATACATGGCGTACATGTTCAAGTATGACTCTACACACGGAAAGTTCAAAGGAACCACCAAGTTGTTGGATGATTCCATTTTGGAAATTAATGGGAAGCAAATAAAAGTTACTAGCAAAAGGGATCCGGCAGACATTCCTTGGGGTGATTATGGGGCTGAGTTCGTGGTTGAATCCTCTGGTGTTTTCACAACCGTGGAGAAGGCTTCTGCACATTTGAAGGGTGGTGCCAAAAAAGTTGTCATATCAGCTCCATCTGCAGATGCTCCTATGTTTGTTGTTGGAGTTAATGAAAAAAATTACAAACCAAACATGGATATTGTCTCAAACGCAAGCTGTACAACAAATTGTCTCGCACCTCTTGCCAAGGTGGTCCATGAGGAATTTGGTATTGTTGAAGGTCTAATGACAACTGTTCATGCAACTACAGCAACTCAAAAGACTGTTGATGGCCCCTCAATGAAGGATTGGCGAGGAGGCCGGGGAGCAGGTCAAAATATAATTCCTAGTTCTACAGGTGCTGCAAAGGCTGTAGGAAAAGTTCTTCCTGAACTTAATGGAAAACTTACAGGAATGTCATTCCGTGTCCCAACTCCAAATGTATCTGTTGTTGACTTAACTTGTCGACTTAAGAAGAAAGCATCTTATGACGAAGTCAAGGCTGCTATCAAGTACGCATCTGAAGGTCCACTTAGAGGCATCCTGGGATACACTGAGGATGATGTTGTTTCCAATGATTTTGTTGGCGATTCGAGGTCAAGTATATTTGATGCAAAGGCTGGAATAGGTCTCAGCTCCTCCTTCATGAAGCTTGTCTCGTGGTACGACAATGAGTGGGGATACAGCAATCGAGTGCTGGACCTTATAGAGCACATGGCAATGGTGGCGGCTAACCGCTAA 1284 43.54 MAASSTLLRSAVNAPLFESSRADLSSSQKISCINLNTSKHRSGTLGSSVSRGAYSLQLKNLLLRKGGIRSIKPIKATATEAPPAVQSKSYISLVVYKRFGRIGRLVLRVAISRDDIDVVAVNDPFIDAKYMAYMFKYDSTHGKFKGTTKLLDDSILEINGKQIKVTSKRDPADIPWGDYGAEFVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKNYKPNMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMSFRVPTPNVSVVDLTCRLKKKASYDEVKAAIKYASEGPLRGILGYTEDDVVSNDFVGDSRSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLIEHMAMVAANR 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28426206 28430011 + BLOR19653 Blo13g00601 68996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00601 427 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 98 415 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Blo13g00601 427 Gene3D Dihydrodipicolinate Reductase; domain 2 241 407 - -
Blo13g00601 427 Gene3D - 99 420 - -
Blo13g00601 427 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 3 427 - -
Blo13g00601 427 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 240 403 - -
Blo13g00601 427 SMART gp_dh_n_7 97 241 IPR020828 GO:0051287
Blo13g00601 427 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 239 246 IPR020830 GO:0016620
Blo13g00601 427 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 235 253 IPR020831 GO:0016620
Blo13g00601 427 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 262 278 IPR020831 GO:0016620
Blo13g00601 427 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 319 336 IPR020831 GO:0016620
Blo13g00601 427 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 359 374 IPR020831 GO:0016620
Blo13g00601 427 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 200 213 IPR020831 GO:0016620
Blo13g00601 427 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 97 262 IPR036291 -
Blo13g00601 427 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 246 403 IPR020829 GO:0016620
Blo13g00601 427 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 427 IPR020831 GO:0016620
Blo13g00601 427 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 99 193 IPR020828 GO:0051287
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00463 Blo13g00601 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00641 Blo-Chr11:6636088 Blo13g00601 Blo-Chr13:28426206 1.18E-168 dispersed
Blo13g00601 Blo-Chr13:28426206 Blo17g00579 Blo-Chr17:10735091 1.77E-88 dispersed
Blo04g01180 Blo-Chr4:21037178 Blo13g00601 Blo-Chr13:28426206 3.93E-169 transposed
Blo13g00601 Blo-Chr13:28426206 Blo04g00463 Blo-Chr4:3846877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00601 K00134 - csv:101203472 661.373