Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00602 ATGAACAACCAGACGAATTACGGGAAAAGAGAACGACGGAGAGCTGCAGATCTGCCATTCGAAGCTGCAACTTCGAGCGGCAGTCTCCAGAGTGAGCCTCTAGGAAGCATGCACAAATTGGGCAGAGGTCACCGCGATAAAGTCCAGCAGTTTATGACTATAACTGGAGCGAGTGAAAAACTTGCCCTTCATGCTTTGAAAGCTAGTGATTGGCATCTTGAAGGAGCGTTTGATGTATTTTACAGTCAACCTCAGATTAAAACATTTACTGATTCAAGACATTTGGAAGAGCTTTACAATAGATATAAAGGCGAGCACCCCTTTTTAGATCACATGTTTCTCTACTTACATCTAAAGTTGGATTTTTTTTTATCTTGTGCAGATCCTTATGTTGATATGATACTGGCTGATGGTATAACTACTCTCTGCAGTGATATTCAGGTGATGGTTCTGGCTATTGGTCAATCAATATTTATTATAGTTGATCCTCAAGACATAGTCACGTTGGTTGTCTCATGGCACATGAAGGCAAATACTATGTGTGAATTTTCAAAACAGGAGTTTATTGGTGGATTGCAATCATTGGGGATTGAATCCCTTGAGAAGTTTCGAGAAAGGATACCCTTCATGCGCTCAGAGCTGAAAGATGAACATAAGTTCCGTGAAATCTACCTTTTTGCATTTGGCTGGGCGAAAGAAAAGGGTCAAAAATCTTTGGCATTGGACACGGCAATAGGAATGTGGCAATTGCTGTTTGCCGATAGGGAGTGGCCTTTGGTTGATCACTGGTGTCAATTCCTACAGGCTCGACACAATAAAGCTATCTCGAGGGACACGTGGTGTCAGCTACTGGAGTTTGCTAGGATGGTAGACACTACGCTTTCAAATTACGATGCTGAAGGGGCTTGGCCTTATCTTATTGACGAATTCGTCGAATACTTGAATGAGAATGGCATTACCCAAAGTGATGAGTCGAATGACCAAAAACGATGA 993 42.2 MNNQTNYGKRERRRAADLPFEAATSSGSLQSEPLGSMHKLGRGHRDKVQQFMTITGASEKLALHALKASDWHLEGAFDVFYSQPQIKTFTDSRHLEELYNRYKGEHPFLDHMFLYLHLKLDFFLSCADPYVDMILADGITTLCSDIQVMVLAIGQSIFIIVDPQDIVTLVVSWHMKANTMCEFSKQEFIGGLQSLGIESLEKFRERIPFMRSELKDEHKFREIYLFAFGWAKEKGQKSLALDTAIGMWQLLFADREWPLVDHWCQFLQARHNKAISRDTWCQLLEFARMVDTTLSNYDAEGAWPYLIDEFVEYLNENGITQSDESNDQKR 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28431058 28437535 - BLOR19654 Blo13g00602 68997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00602 330 Gene3D - 158 215 - -
Blo13g00602 330 Gene3D - 42 83 - -
Blo13g00602 330 PANTHER RP42 RELATED 49 103 IPR014764 -
Blo13g00602 330 CDD UBA_DCNL 44 84 - -
Blo13g00602 330 SUPERFAMILY UBA-like 43 82 IPR009060 GO:0005515
Blo13g00602 330 Gene3D Cullin, PONY binding domain 216 324 IPR042460 -
Blo13g00602 330 Pfam UBA-like domain 45 83 - -
Blo13g00602 330 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 49 103 - -
Blo13g00602 330 Pfam Cullin binding 203 313 IPR005176 -
Blo13g00602 330 ProSiteProfiles DCUN1 domain profile. 90 315 IPR005176 -
Blo13g00602 330 PANTHER RP42 RELATED 121 322 IPR014764 -
Blo13g00602 330 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 121 322 - -
Blo13g00602 330 MobiDBLite consensus disorder prediction 1 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00602 K17822 DCUN1D1_2; DCN1-like protein 1/2 - zju:107412778 449.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00462 Blo13g00602 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00135 Blo-Chr10:1531267 Blo13g00602 Blo-Chr13:28431058 1.82E-21 dispersed
Blo13g00602 Blo-Chr13:28431058 Blo07g00680 Blo-Chr7:22151830 5.31E-12 dispersed
Blo13g00602 Blo-Chr13:28431058 Blo04g00462 Blo-Chr4:3840798 1.07E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1150 Blo04g00462 Blo13g00602 . . . . Bma08g00821 . . . . . . . Sed05g1833 Cpe04g00866 . Bhi05g01993 Tan02g0025 . . . . . . . . . . . . . . . . . Csa07g01210 . . . . . . Bpe15g00919 . Bma03g00495 . . . . . . . . Cpe15g00904 . . . . . . . . . . . . . . . . . . Cme01g01501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003443 1 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 10 2 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00602 Blo_Chr13 FPKM 0.64 0.997569 20.329849 17.825073 2.695799 3.36092 2.445248 0.505116 1.437852 1.273943