Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00604 ATGGAGGACGGCTTTGCTTCCGAGAAGCTCTTTAATCAGGGATACTCCTACACCTATGATGACGTCATCTTCCTCCCTCATTACATTGACTTCCCTACCGACGCTGTACGACTCGCTACACGACTCACGCGCAACCTCACTCTCTCCATCCCTTGCGTTTCTTCCCCCATGGATACTGTCACTGAGTCTCACATGGCAGCTTCTATGGCCGCTCTCGGTGGTATCGGTATTATTCACTCTAACACCACTGCTTCTCATCAGGCTTCCATGGTTCGATCCGCTAAGTCTCGTCTAGTTCCTATTCTTTCCAATCCAGTGTTTAAGTCTCCTTCGGATCATATTGATTCTGTAGACGATTTTGGCTCCTCGCCGGTGATTTTGGTTACGGAGGCTGGCTCTGCAAAATCAAAGCTTCTGGGATATGTATCGCAAGCTAATTGGATTGGGCTTGAGGATAAAGAGGTTAAAATATATGATTATATGGTTAATTCCGTGGATTCAGCTCCCTGGAATCGTGATTTATCAGGAATTGACAAGTTTTTTGATGAAAAAGAGAGAGATTTCTTGCCCCTAGTGAATAATAACGAGATTGTGGGCATTGCAACCAAGGAAGACGTGAATAGGATCAAAGGTTATCCTAAACTGGGAGTCGGTTCAGTTGGTGCTGATGGAACTTGGATGGTTGGAGCGTCCATCGGAACGAGGGAGCAGGACAAGGAGAGGTTAGAGGAGTTAGTGAAGGCAGGGGTGAATGTAGTTGTATTGGATAGCTCTCAGGGTAACTCGATTTATCAGATTGATATGATAAAGTATGTGAAAAGGACATACCCAGAGTTAGATGTCATTGGAGGAAATGTTGTTACTATGAACCAAGCGCAAAATTTGATTCAGGCAGGTGTGGATGGGTTGCGAGTGGGAATGGGGTCTGGGTCTATTTGTACCACTCAAGAGGTTTGTGCTGTTGGGCGCGGACAGGCGACTGCTGTTTACAAGGTTTCATCAATCGCTTCAAACAGTGGTGTACCTGTCATTGCAGATGGCGGCATTTCAAATTCTGGACACATTGTTAAAGCACTTGTACTTGGTGCATCTACTGTTATGATGGGGAGCTTCCTAGCTGGAAGCATTGAAGCTCCCGGTGCTTATGTTTACCAGAATGGTCGGCAGGTCAAAAAATATAGAGGCATGGGCTCTTTAGAAGCAATGACTAAAGGCAGTGATGCAAGGTACTTGGGAGATACTGCAGTTTTGAAAATTGCACAGGGCGTTGTTGGTGCAGTTGCAGATAAGGGTTCTGTTCTGAAGTTTATACCATACACAATGCAAGCAGTCAAGCAAGGATTTCAAGATCTTGGTGCGTCCTCTATGGAGTCTGCCCATGACCTCTTGAGGTCTAGCACTTTAAGGCTAGAGGTTCGAACCGGAGCAGCACAAGTCGAAGGAGGGATTCACGGCCTCGTTTCTTACCAAAAGAAATCATTTTGA 1485 45.79 MEDGFASEKLFNQGYSYTYDDVIFLPHYIDFPTDAVRLATRLTRNLTLSIPCVSSPMDTVTESHMAASMAALGGIGIIHSNTTASHQASMVRSAKSRLVPILSNPVFKSPSDHIDSVDDFGSSPVILVTEAGSAKSKLLGYVSQANWIGLEDKEVKIYDYMVNSVDSAPWNRDLSGIDKFFDEKERDFLPLVNNNEIVGIATKEDVNRIKGYPKLGVGSVGADGTWMVGASIGTREQDKERLEELVKAGVNVVVLDSSQGNSIYQIDMIKYVKRTYPELDVIGGNVVTMNQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIASNSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSIEAPGAYVYQNGRQVKKYRGMGSLEAMTKGSDARYLGDTAVLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSMESAHDLLRSSTLRLEVRTGAAQVEGGIHGLVSYQKKSF 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28449328 28452126 + BLOR19656 Blo13g00604 68999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00604 494 Hamap Inosine-5'-monophosphate dehydrogenase [guaB]. 16 492 IPR005990 GO:0003938|GO:0006164
Blo13g00604 494 ProSitePatterns IMP dehydrogenase / GMP reductase signature. 303 315 IPR015875 GO:0016491
Blo13g00604 494 Gene3D Aldolase class I 4 494 IPR013785 -
Blo13g00604 494 PANTHER INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 2 494 IPR005990 GO:0003938|GO:0006164
Blo13g00604 494 SUPERFAMILY CBS-domain pair 125 208 IPR046342 -
Blo13g00604 494 SMART IMPDH_2 15 484 - -
Blo13g00604 494 TIGRFAM IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 16 460 IPR005990 GO:0003938|GO:0006164
Blo13g00604 494 PIRSF IMPDH 4 494 IPR005990 GO:0003938|GO:0006164
Blo13g00604 494 PANTHER INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE 1 2 494 - -
Blo13g00604 494 CDD IMPDH 16 464 IPR001093 GO:0003824
Blo13g00604 494 SUPERFAMILY Inosine monophosphate dehydrogenase (IMPDH) 8 492 - -
Blo13g00604 494 Pfam IMP dehydrogenase / GMP reductase domain 17 484 IPR001093 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00604 K00088 IMPDH, guaB; IMP dehydrogenase [EC:1.1.1.205] - csv:101217193 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00604 Blo-Chr13:28449328 Blo04g00459 Blo-Chr4:3819238 6.83E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1164 . Blo13g00604 . . . . Bma08g00823 . . . . . . . Sed04g3557 . . Bhi05g01988 Tan02g0021 Cmetu01g0138 Lac12g0035 Hepe02g0009 . . . . . . . . . . . . . . Csa07g01216 . . . . . . . . . . . . . . . . . Cpe15g00908 . . . . . . . . . . . . . . . . . Chy01g00847 Cme01g01496
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007875 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00604 Blo_Chr13 FPKM 16.766304 19.479712 23.315384 27.196415 3.534228 3.386275 2.244308 47.080509 45.549252 43.948444