Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00605 ATGCTTCTGCAACTTGAATCGCATTTGTTCTGGAATCTCTCTTCCAGCAGAAGAATGTTCCACCCAAAGAAGCCATCAACTATGATTTCTCACGATCAAGGCGACTCTGGCCTGGTCCTCACCACAGACCCCAAACCCCGCCTCCGATGGACCCTCGAGCTCCATACACGCTTTGTCGAGGCCGTCACCCAGCTCGGAGGCCCTGATAGAGCAACCCCAAAGACCATCATGAGGGTTATGGGTGTGAAGGGTCTAACTCTGTACCATCTCAAAAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAACCTCATAAAGAATTCACCGATCACTCGATTAAGCATGCTTCTTCCTTAGAACTTCAGCGAAACACGCCGTCTCCATCCAACGTTGTCATTGGCCGCAATACGAATGATAACTCGCACATGGTCGATGCAACTAAGATGCAAATGGAGGTGCAGCGAAGACTGCATGAACAAATAGAGGTGCAAAGGCATCTTCAACTGAGAATGGAGGCTCAAGGGCAGTACATGCAAAGTATACTAGAGAAGGCATGTCAAACCCTTGTCAGTGAAAATATGGCTTGGGGAGGATCATCCTTCAAGGCAATGGTTCCTTGTTTTCAAGAACTTAACCTCTGGGGAAGAGACCAGTTTGACTTCGACGAACAAATGGATGGTTTTCTGCCCACTGACGACGACATTTGTCTTGAGAAGGAGAGTAGCTCGTATAGCGATGGTGGAAAGAGCCAGCTTCTCTGGTCAGAAGGTCTCCAGCTTCATGTGTTAGGGATGGCGGCAGCTTCAGGCGCTTTTGAAGGAGAGAGAATTGCGGATCTATTCTAG 843 48.64 MLLQLESHLFWNLSSSRRMFHPKKPSTMISHDQGDSGLVLTTDPKPRLRWTLELHTRFVEAVTQLGGPDRATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFTDHSIKHASSLELQRNTPSPSNVVIGRNTNDNSHMVDATKMQMEVQRRLHEQIEVQRHLQLRMEAQGQYMQSILEKACQTLVSENMAWGGSSFKAMVPCFQELNLWGRDQFDFDEQMDGFLPTDDDICLEKESSSYSDGGKSQLLWSEGLQLHVLGMAAASGAFEGERIADLF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28469327 28470685 + BLOR19657 Blo13g00605 69000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00605 280 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Blo13g00605 280 Pfam MYB-CC type transfactor, LHEQLE motif 143 187 IPR025756 -
Blo13g00605 280 Gene3D - 44 102 - -
Blo13g00605 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 19 255 - -
Blo13g00605 280 Pfam Myb-like DNA-binding domain 48 96 IPR001005 -
Blo13g00605 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 19 255 IPR044848 GO:0003700
Blo13g00605 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Blo13g00605 280 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00605 - - - vri:117908572 340.887
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00605 Blo15g00640 CCT
Blo04g00455 Blo13g00605 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00605 Blo-Chr13:28469327 Blo16g00685 Blo-Chr16:26475340 1.86E-66 dispersed
Blo13g00605 Blo-Chr13:28469327 Blo04g00455 Blo-Chr4:3788347 9.13E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13157 PF00249 Myb_DNA-binding 1.80E-06 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00605 Blo_Chr13 FPKM 3.443431 2.858628 0.758492 1.168594 4.333753 4.479177 5.419889 0.241566 0.247829 0.245646