Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00639 ATGGAGACCCGGCAACCAACTTCTGATTCTAATGGTGTCTCAGGGTCTTGCCTATTTGATCTATTATTGTCAGATTCAGATGCTCCAGGCTATTGGGAAAGGGTCCATAAGACGTCTTCAGGTGCACGGACAAGGCTCGAGGATCTGTTACGTCAACCAGGCAATAATCAATGTGCAGATTGTGGATCTCCTAATCCAAAATGGGTATCCTTAAGTTTTGGAACATTTATTTGTATAAAGTGTTCTGGAGTACATAGAAGCCTTGGAGTGCATATAACTAAGGTTTTATCAGTGAAGCTAGATGAGTGGAACGATGAACAAGTTGATACACTGATAAATAAGGGTGGAAATACTACAGTGAACAAGAAGTATGAAGCTTGCATACCAGAAGGACTGAAAAAACCAAAATCAGAATCCTGTATAGAAGAACGATGCCATTTTATAAGGAGCAAATACGAGCTGCTAAAATTTTCGAGCCATGAAGATCAGCCAAAGTCTCATAAAAGAAATTCATCTTCCCCCCATATTTCTGTAAGCCATAACTCCACCCAAGAAAAGAAACAGCACGATAAACATCGTATTGGGAATGCATTTAGGAACAGCCGGGTATGGAAAGATTCAGACTACAAGATCTTTAAGAAGACTAACTCATTGGCAGCAAGTAATTCAACGGCTGGTATGGTTGAATTTGTGGGCTTCATCAAGGTCAATGTTGTGAGAGGCACCAACCTAGCTGTCCGAGACGTGATAACAAGCGATCCTTATGTTATTCTCACGTTGGGACGTCAATCCGTGAAGACGCGTGTGATCAAGAGTAGTCTCAATCCCGTGTGGAATCAGAGCCTTATGCTTTCCATTCCCGAGTGCATTCCTCCGCTGAACGTGCTTGTTTACGACAAGGACACGTTTTCAACTGATGACTTCATGGGAGAGGCCGAAATCGACATTCAACCGCTTCTAACGGCAGCCAAGGCCTACGAAAGCTCTACAATTCACAGGTCAACTCAGCTCGGAAAGTGGATTGCAAGTAAGGAGAACACCCTAGTCAAAGATAGTGTGATCAACGTAGTAGATGGAAAGGTGAGACAGGAGATCTCCCTCCGCCTACAAAAAGTCGAGAGGGGCGTGCTAGAGATCGAGCTCGAATGTGTTCCTCTCACTCAATAG 1167 43.7 METRQPTSDSNGVSGSCLFDLLLSDSDAPGYWERVHKTSSGARTRLEDLLRQPGNNQCADCGSPNPKWVSLSFGTFICIKCSGVHRSLGVHITKVLSVKLDEWNDEQVDTLINKGGNTTVNKKYEACIPEGLKKPKSESCIEERCHFIRSKYELLKFSSHEDQPKSHKRNSSSPHISVSHNSTQEKKQHDKHRIGNAFRNSRVWKDSDYKIFKKTNSLAASNSTAGMVEFVGFIKVNVVRGTNLAVRDVITSDPYVILTLGRQSVKTRVIKSSLNPVWNQSLMLSIPECIPPLNVLVYDKDTFSTDDFMGEAEIDIQPLLTAAKAYESSTIHRSTQLGKWIASKENTLVKDSVINVVDGKVRQEISLRLQKVERGVLEIELECVPLTQ 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28948742 28952224 - BLOR19691 Blo13g00639 69034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00639 388 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 34 388 IPR044518 GO:0005096|GO:0005543
Blo13g00639 388 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 34 388 - -
Blo13g00639 388 SMART C2_3c 233 328 IPR000008 -
Blo13g00639 388 Pfam Putative GTPase activating protein for Arf 45 159 IPR001164 GO:0005096
Blo13g00639 388 MobiDBLite consensus disorder prediction 159 197 - -
Blo13g00639 388 Pfam C2 domain 234 323 IPR000008 -
Blo13g00639 388 SUPERFAMILY ArfGap/RecO-like zinc finger 44 158 IPR037278 -
Blo13g00639 388 ProSiteProfiles C2 domain profile. 214 329 IPR000008 -
Blo13g00639 388 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 229 324 IPR035892 -
Blo13g00639 388 CDD ArfGap 46 152 - -
Blo13g00639 388 MobiDBLite consensus disorder prediction 182 197 - -
Blo13g00639 388 PRINTS HIV Rev interacting protein signature 95 116 IPR001164 GO:0005096
Blo13g00639 388 PRINTS HIV Rev interacting protein signature 55 74 IPR001164 GO:0005096
Blo13g00639 388 PRINTS HIV Rev interacting protein signature 74 91 IPR001164 GO:0005096
Blo13g00639 388 CDD C2_ArfGAP 231 375 - -
Blo13g00639 388 Gene3D C2 domain 231 384 IPR035892 -
Blo13g00639 388 SMART arf_gap_3 43 166 IPR001164 GO:0005096
Blo13g00639 388 Gene3D Arf GTPase activating protein 30 166 IPR038508 -
Blo13g00639 388 ProSiteProfiles ARF GTPase-activating proteins domain profile. 43 166 IPR001164 GO:0005096
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00627 Blo-Chr3:25655108 Blo13g00639 Blo-Chr13:28948742 9.64E-26 dispersed
Blo03g01420 Blo-Chr3:40778959 Blo13g00639 Blo-Chr13:28948742 1.71E-26 dispersed
Blo07g00006 Blo-Chr7:109092 Blo13g00639 Blo-Chr13:28948742 6.77E-17 dispersed
Blo07g01184 Blo-Chr7:31694513 Blo13g00639 Blo-Chr13:28948742 1.60E-18 dispersed
Blo08g00256 Blo-Chr8:3265436 Blo13g00639 Blo-Chr13:28948742 1.20E-101 dispersed
Blo09g00326 Blo-Chr9:13606514 Blo13g00639 Blo-Chr13:28948742 1.83E-17 dispersed
Blo13g00639 Blo-Chr13:28948742 Blo17g00457 Blo-Chr17:6050322 2.86E-37 dispersed
Blo13g00639 Blo-Chr13:28948742 Blo04g00402 Blo-Chr4:3293491 3.47E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00639 K12486 - csv:101215531 499.975