Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00641 ATGTGCCAGCAGAAATTCACCCGACGTCCTGACCCTAGCACTGCAGTCCAACACCCCAAAGTCAAACCTAGCACCCCGAAGTCAAACGCTCAGGGAACGCAGACAGTACACTGGCACTCGCACCCACAGTCCACTGCTTCTCTGAGTTCTCTCTGTCGTCTCACTCACCGTCACTCTGAGTCCCGAATCCCGACTCTGAGTCCCAATCTTTCCAGCGTCAAGCAAGTCTCCACTCTGGCCCTCCCAACCCGAACGGCTTCCGTAATGCCTTTTAAGTTTGTTGAATCAGAGAGTTTTAGAGTTTATTCTAATTATTTACAACTAAAATTTGTTGTACCCTCTAGAACTACGATTGCACGAGATGTTATTGGAATTTATGAGAAAGAGAAAACAAAGTTGAAAGAATACTTTAAGAACACATCTCAATGCGTATGCTTGACTACGGATACATGGACTTCCATTCAAAATTTGAATTATATGGTTTTAACTGCACATTTTGTTGATTGTGATTGGAATTTGCATAATAAGATCATCAATTTTTGTTTGATTGCAAATCAAAATGGTGAAACCATTGGTAAAAAAGTATACAATACTACTATGGCATCTGGAAATGGAATTCCTTATTTTGATGATGTGCGAATTAAACCTGAGGTTATTGACCCTCCACAAACTGAAGATACGATGGATGTTGGTGAAAGCGTGAATGATCCTGCTCAAAGTGGCTTAAAACCTAATTTGACTGTCACCAGCAGCGTACGGGATCTTTTAGAATGTCCCGTGTGTTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCAAATGGTCACACACTGTGCTCTGTTTGCAAGCCCAGGGTGCACAACCGGTGCCCCACTTGTAGGCATGAACTTGGTAATATTAGATGCCTGGCATTGGAGAAGGTGGCTGCATCTCTAGAACTTCCATGTAAATATGAGAGCTTTGGTTGCTTGGGCATTTATCCTTATTACAGCAAGCTTAAACATGAATCCCAGTGTGTTTATAGGCCTTATAATTGTCCCTATGCTGGATCAGAATGTACGGTCATTGGTGATATACCTTATCTGGTGTCACACCTTAAAGATGATCATAAAGTTGATATGCATACCGGCAGTACTTTCAACCATCGTTATGTCAAATCGAATCCACAAGAGGTTGAAAATGCCACATGGATGCTGACGGTTTTCAGCTGCTTTGGCCAGTACTTCTGCCTGCATTTTGAAGCATTTCAGCTTGGAATGGCTCCTGTCTACATTGCTTTTTTGCGGTTTATGGGTGATGATCACGAGGCAAAGAACTACAGCTACAGCCTGGAGGTTGGGGGGAATGGAAGGAAGATGATTTGGCAAGGAGTTCCGAGGAGTATTAGGGACAGTCACCGTAAAGTTCGTGACAGTTTTGATGGGCTAATCATCCAACGCAATATGGCCCTCTTTTTTTCAGGAGGAGATCGGAAGGAATTAAAGCTTAGGGTGACTGGAAGAATCTGGAAAGTACAGTGA 1521 42.93 MCQQKFTRRPDPSTAVQHPKVKPSTPKSNAQGTQTVHWHSHPQSTASLSSLCRLTHRHSESRIPTLSPNLSSVKQVSTLALPTRTASVMPFKFVESESFRVYSNYLQLKFVVPSRTTIARDVIGIYEKEKTKLKEYFKNTSQCVCLTTDTWTSIQNLNYMVLTAHFVDCDWNLHNKIINFCLIANQNGETIGKKVYNTTMASGNGIPYFDDVRIKPEVIDPPQTEDTMDVGESVNDPAQSGLKPNLTVTSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSVCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYESFGCLGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPYLVSHLKDDHKVDMHTGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDHEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKVQ 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 28959450 28968287 - BLOR19693 Blo13g00641 69036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00641 506 MobiDBLite consensus disorder prediction 1 40 - -
Blo13g00641 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 309 IPR013083 -
Blo13g00641 506 MobiDBLite consensus disorder prediction 18 40 - -
Blo13g00641 506 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 367 499 IPR008974 GO:0005515
Blo13g00641 506 SUPERFAMILY RING/U-box 247 297 - -
Blo13g00641 506 SUPERFAMILY Ribonuclease H-like 131 187 IPR012337 -
Blo13g00641 506 CDD RING-HC_SIAHs 256 294 - -
Blo13g00641 506 CDD Sina 372 500 - -
Blo13g00641 506 ProSiteProfiles Zinc finger RING-type profile. 258 294 IPR001841 -
Blo13g00641 506 Pfam Seven in absentia protein family 300 499 IPR018121 GO:0005737|GO:0006511|GO:0007275
Blo13g00641 506 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 215 505 - -
Blo13g00641 506 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 215 505 - -
Blo13g00641 506 SUPERFAMILY TRAF domain-like 311 503 - -
Blo13g00641 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 366 IPR013083 -
Blo13g00641 506 ProSiteProfiles Zinc finger SIAH-type profile. 311 371 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01280 Blo-Chr7:33007117 Blo13g00641 Blo-Chr13:28959450 1.72E-153 dispersed
Blo13g00641 Blo-Chr13:28959450 Blo15g00087 Blo-Chr15:726299 4.85E-164 dispersed
Blo18g00690 Blo-Chr18:14886456 Blo13g00641 Blo-Chr13:28959450 2.54E-61 transposed
Blo18g00792 Blo-Chr18:23104391 Blo13g00641 Blo-Chr13:28959450 3.96E-08 transposed
Blo13g00641 Blo-Chr13:28959450 Blo04g00397 Blo-Chr4:3223679 5.41E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00641 K04506 - qsu:112009971 611.298