Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00680 ATGGTGTCAGCGAATAAGGAGATGGTAGTGTACTGCTTCGATACCCTCATCGCTCATTACAACGGCGACGACGCCCCTCCACCTGCCTTTGATGACGGTCAACATTTACTCTCTGGTCTCAGTCCTTTGTTCGTTACCTGGAAAAAAGTGATCAATGGCGGAGAGCCTCGTCTTCGCGGATGTATTGGAACTCTAGAACCGCGTTGGTTGGTTAATGGCTTCAAGGATTTTGCTTTAATTAGTGCTTTGAAGGACCGTAGGTTCCCTCCAATACAACCTAAAGAATTACCCTCCTTGGAATGCACAGTTTCCATTCTGACCGACTATGAAATGGCTAACAATTATCTTGACTGGGAGGTCGGGAAGCACGGCATTATTATTGAGTTCACCGATCCGAGTGATAATACGAGGCAAAATGCTACGTACTTGCCGGAAGTTGCTGCTCACGAAGGCTGGGCAAATCGGTTCTCGGTTCCGTTCCGGACTTCTTGGAACCGACCTTTCTGGTTTTTGGTATCTGCAGTTTTTCTTGTTGTCGCGGATGAATCAGTAGGAAGAAGTGTGCCTTTTGTTTTCCTTGATCGAGCCCAGGCCAAGGCTCAAGGAGCACATGCAATATTGCATGAAGAAGAAATGAGCAGGCTGGCCAAATTGAAGGCTCAAATTATCAAGGTCAAGGGAATTATGATGGACAATATGGAAAGGCGGAAGGGAGGTCGAGGGAGGAGGCGAGCTGCCCGAGACCGAGCGTGGAAATCGGGGATGGGGTCTGATCGGCCACTGCCCGAATGGGCTTCAATGCCTTGCATTATGGGAATCGATGAAGCCGGTCGAGGTCCTGTTCTAGGGCCGATGGTCTACGGGTGCTTGTACTGTTCTCGTTCTTATCAGAAGACTCTTTCATCTTTGAATTTTGCAGATTCAAAGACGTTAAAGGAAGAAAAGAGGGAAGAACTATTTGAAAATTTGAAAGCTGATGAATCAATTGGATGGGCTGTTGATGTTATAGATCCAAGGGAACTTTCTGCTAAAATGTTAAAGAAAAGTAAGATAAATTTGAACGAAATATCACATGACTCTGCAATTGGACTGGTCACAAGGGTCCTAAACCTGGGAGTTCTTCTCACTGAGGTTTATGTGGACACAGTGGGTGATCCTGAAAAGTACAGAATAAAACTCTCAGAAAGATTTCCATCTATCAAATTTGTTGTTGCTAAGAAGGCTGATAGTCTTTATCCAGTAGTGAGTGGAGCAAGCATAGTTGCAAAGGTCACTAGAGACCATGCTTTAAAGGGATGGGTGCTTGATGAAACAGCTGAAAAAATGCATAGAAATTTTGGTTCTGGATACCCTGGAGATCCTGAAACAAAGGCTTGGTTGGAAGCTCACAAACACTCAGTTTTTGGATTTCCGACATTGGTTCGATTCAGTTGGGGTACATGCACTCCATTTTTCAAAAATATGGTCGAAGTTTTATGGGAATGTGACAATGAGGACGATGAAAACCTGGGTCTAAATGGCAGTATTGGAAAGAAGCAACTGAAGCTAAGCAATGTTGGTTTCACATCATCCAAGAGAAAAAGTGAAGAAATCGAATCAAATGCTAGAGGGCGCTGTAAGAGAGAAGCCAAGCCGGTGGCGATGACCACCGATAAAAGTCCGGCACAGCTCTGGCAGCAATTTGCGGAGCTCCGGTGCCTTTTCCGGTGGTGTTGTCTGGCAGCTCCAGCAGCATAA 1737 45.48 MVSANKEMVVYCFDTLIAHYNGDDAPPPAFDDGQHLLSGLSPLFVTWKKVINGGEPRLRGCIGTLEPRWLVNGFKDFALISALKDRRFPPIQPKELPSLECTVSILTDYEMANNYLDWEVGKHGIIIEFTDPSDNTRQNATYLPEVAAHEGWANRFSVPFRTSWNRPFWFLVSAVFLVVADESVGRSVPFVFLDRAQAKAQGAHAILHEEEMSRLAKLKAQIIKVKGIMMDNMERRKGGRGRRRAARDRAWKSGMGSDRPLPEWASMPCIMGIDEAGRGPVLGPMVYGCLYCSRSYQKTLSSLNFADSKTLKEEKREELFENLKADESIGWAVDVIDPRELSAKMLKKSKINLNEISHDSAIGLVTRVLNLGVLLTEVYVDTVGDPEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDHALKGWVLDETAEKMHRNFGSGYPGDPETKAWLEAHKHSVFGFPTLVRFSWGTCTPFFKNMVEVLWECDNEDDENLGLNGSIGKKQLKLSNVGFTSSKRKSEEIESNARGRCKREAKPVAMTTDKSPAQLWQQFAELRCLFRWCCLAAPAA 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 29515756 29528655 + BLOR19732 Blo13g00680 69075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00680 578 Gene3D - 244 440 IPR036397 GO:0003676
Blo13g00680 578 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 268 490 IPR024567 GO:0004523
Blo13g00680 578 Pfam AMMECR1 10 154 IPR002733 -
Blo13g00680 578 CDD RNase_HII_eukaryota_like 271 490 - -
Blo13g00680 578 SUPERFAMILY AMMECR1-like 4 153 IPR036071 -
Blo13g00680 578 Gene3D Hypothetical protein ph0010; domain 1 3 131 IPR027485 -
Blo13g00680 578 PANTHER RIBONUCLEASE H2 SUBUNIT A 261 540 IPR001352 GO:0003723|GO:0004523
Blo13g00680 578 PANTHER RIBONUCLEASE 261 540 - -
Blo13g00680 578 TIGRFAM TIGR00729: ribonuclease HII 270 482 IPR004649 GO:0004523|GO:0016070
Blo13g00680 578 Gene3D Ribonuclease hii. Domain 2 441 488 IPR023160 GO:0004523
Blo13g00680 578 SUPERFAMILY Ribonuclease H-like 269 486 IPR012337 -
Blo13g00680 578 ProSiteProfiles AMMECR1 domain profile. 1 195 IPR002733 -
Blo13g00680 578 Pfam Ribonuclease HII 271 481 IPR024567 GO:0004523
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00680 Blo-Chr13:29515756 Blo07g01070 Blo-Chr7:30531785 8.00E-09 dispersed
Blo04g00363 Blo-Chr4:2889353 Blo13g00680 Blo-Chr13:29515756 1.86E-62 transposed
Blo13g00680 Blo-Chr13:29515756 Blo04g00362 Blo-Chr4:2885701 5.24E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00680 K10743 - csin:114322663 498.434