Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00730 ATGGGAAAGAGAGGAAGTTGGTTTTGCGCAGTGACAAAAGTTCTGGGTTCTGAACCGAAGGAAAAGAAAGATCAGAAAACCCAGAAAACGAAGAGAAAATGGTTTGGAAAGAATAAGAAAACAGATGTGATTACTTTTTTGGAAGAAACAGCTCCACTGCCTCTTCTTCCTTCGCCACTTCCTGCTCTAGAAGACGTGAAATTGACAGGTGTTGAGAATGAACAAAGCAAGCACGCCTACTCTGTGGCACTTGCCACCGCAGCTGCAGCAGAGGCTGCTGTGGCGGCGGCTCGGGCAGCGGCCGAGGTTGTTCGTCTGACCACAATTCCTCGTTTCGTGGGAAAATCAAAAGACGAAATAGCAGCCATCAAAATTCAAACAGCATTTCGTGGATATTTGGCGAGAAGAGCTTTGCGAGCATTAAGAGGGCTCGTCCGGTTGAAAATGTTGATGGAAGGGCCATCTGTAAAACGGCAAGTGGCTTCCTCGTTGAGATGCATGCAGACTCTCGCACGTTTGCAATCGCAGATCCGTTCGAGGAGGCTTAGAATGTCTGAGGAGAACCGGGCTCTTCAGCATCAACTTCAGCGGAAACACGAAAAAGAACTTGCAAAATTAAGAGCTTCTATTGGTGAAGAATGGGACGATAGAACACAGTCAAAGGAGCAAGTTGAAGCCAAAGTACTCAACAAGCAAGAAGCTGCCTTGAGAAGAGAAAGGGCTCTGGCCTATGCTTTCTCTCACCAGCAAACTTGGAAGAACTCTTCGAAATCGGCAAACCAAACGTTCATGGATCCGATCAACCCTCATTGGGGTTGGAGCTGGTTGGAGCGATGGATGGCTTCTCGGCCATGGGAGGCTAAAAACGTAATTGATTACAACGATCATACGACTCCAAACCACGGGGCTTCTATTGGAGATGTCAACCAAGTGTATACCCGTCGAGATCTCAACCTCGAACTAAAGAATTCCCTATGGACTCCGCCTACCCAAAAGTCGAGCAGGCCTCCAAGCCGCCAGTCCCCATCGACTCCTTCAAAGGCACTGCCTTCTTCGTCTCTGTCGAGGAAAATAAAGCCGTCCAGCCCGAGATGGGTTGGAGACAACGACTCTAGAAGTGTGTATAGTGTCACTTCGGAAAGGTGCCGGAGACACAGCATTGCAGGGTCGTCAGTCAGAGACGACGAAAGTCTAGTCAGCTCGGCTTCGGTTCCAAGCTATATGGGATCCACGGAGTCCACAAAGGCAAAGACTCGATTTGCAAGCCCTGCCGGAGTGGACAAAGCCAATACACCGGAGAAGGAATCAGCTACTTATGTGAAGAAGAGGTTGTCTTTCTCGTCGTCCCCAGCCCCACCGAGGAGGTATTCCGGCCCTCCGGAGATCAATACGAGCACTAGAGAATTGAATAAAAGATGTGTTTGTTTGGAGAAAATGAGTGTTTTTTCATCACTTCTAACATGGTTTTCTGCTAATCCATTAATTCCACTGTTGTTGCCAGTGTTTGTGTTAGTGTGTATGATTCATTTACACCAGGGTACACCTTTTCTGGCTGGCCTTGCAGTAGCAGCTGCAGCTCTTGCTGGCCGATATGGTATACAGGCTTGGCAATCATTCAAGAATCAGCCACCAAAACTACGCAAATTCTATGAAGGCGGATTTCAGCCCACAATGACAAGAAGAGAAGCAGCTCTTATTCTCGGTGTAAGAGAGAATGCAACTCCAGACAAGGTTAAGGAAGCACATAAAAAGGTAATGGTGGCAAACCACCCAGATGCTGGCGGAAGCCATTATCTTGCCTCCAAGATCAACGAAGCTAAAGATTTGATGCTCAGAAAAACCAAAGGCAATGGATCAGCATTTTGA 1866 47.7 MGKRGSWFCAVTKVLGSEPKEKKDQKTQKTKRKWFGKNKKTDVITFLEETAPLPLLPSPLPALEDVKLTGVENEQSKHAYSVALATAAAAEAAVAAARAAAEVVRLTTIPRFVGKSKDEIAAIKIQTAFRGYLARRALRALRGLVRLKMLMEGPSVKRQVASSLRCMQTLARLQSQIRSRRLRMSEENRALQHQLQRKHEKELAKLRASIGEEWDDRTQSKEQVEAKVLNKQEAALRRERALAYAFSHQQTWKNSSKSANQTFMDPINPHWGWSWLERWMASRPWEAKNVIDYNDHTTPNHGASIGDVNQVYTRRDLNLELKNSLWTPPTQKSSRPPSRQSPSTPSKALPSSSLSRKIKPSSPRWVGDNDSRSVYSVTSERCRRHSIAGSSVRDDESLVSSASVPSYMGSTESTKAKTRFASPAGVDKANTPEKESATYVKKRLSFSSSPAPPRRYSGPPEINTSTRELNKRCVCLEKMSVFSSLLTWFSANPLIPLLLPVFVLVCMIHLHQGTPFLAGLAVAAAALAGRYGIQAWQSFKNQPPKLRKFYEGGFQPTMTRREAALILGVRENATPDKVKEAHKKVMVANHPDAGGSHYLASKINEAKDLMLRKTKGNGSAF 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 30127523 30131772 + BLOR19782 Blo13g00730 69125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00730 621 PANTHER IQ-DOMAIN 5-RELATED 1 466 - -
Blo13g00730 621 CDD DnaJ 566 608 IPR001623 -
Blo13g00730 621 MobiDBLite consensus disorder prediction 393 418 - -
Blo13g00730 621 SUPERFAMILY Chaperone J-domain 552 613 IPR036869 -
Blo13g00730 621 MobiDBLite consensus disorder prediction 323 359 - -
Blo13g00730 621 ProSiteProfiles dnaJ domain profile. 562 615 IPR001623 -
Blo13g00730 621 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Blo13g00730 621 Gene3D - 31 144 - -
Blo13g00730 621 MobiDBLite consensus disorder prediction 322 463 - -
Blo13g00730 621 SMART dnaj_3 561 615 IPR001623 -
Blo13g00730 621 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 466 - -
Blo13g00730 621 Gene3D DnaJ domain 548 615 IPR036869 -
Blo13g00730 621 SMART iq_5 117 139 IPR000048 GO:0005515
Blo13g00730 621 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00730 - - - vvi:100256490 531.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00915 Blo13g00730 CCT
Blo13g00915 Blo13g00730 ECH
Blo13g00730 Blo13g00915 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01409 Blo-Chr7:34116855 Blo13g00730 Blo-Chr13:30127523 1.09E-92 dispersed
Blo09g00025 Blo-Chr9:290840 Blo13g00730 Blo-Chr13:30127523 2.66E-27 dispersed
Blo09g00550 Blo-Chr9:16793475 Blo13g00730 Blo-Chr13:30127523 2.63E-139 dispersed
Blo13g00730 Blo-Chr13:30127523 Blo16g00006 Blo-Chr16:433825 7.38E-36 dispersed
Blo07g00960 Blo-Chr7:28965953 Blo13g00730 Blo-Chr13:30127523 2.51E-27 transposed
Blo12g00460 Blo-Chr12:22154907 Blo13g00730 Blo-Chr13:30127523 1.70E-48 wgd
Blo13g00730 Blo-Chr13:30127523 Blo13g00915 Blo-Chr13:31675462 9.24E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00730 CCT,ECH 65 305 IQD Protein Family AT3G09710 50.8 6.9e-56 215.3
Blo09g00550 BCT 1 468 IQD Protein Family AT5G03040 50.3 7.4e-103 371.3
Blo13g00730 CCT,ECH 1 466 IQD Protein Family AT3G52290 51.1 1.1e-95 347.4
Blo03g01027 . 10 361 IQD Protein Family AT3G22190 57.0 4.0e-79 292.4
Blo01g01460 BCT 1 439 IQD Protein Family AT2G26180 60.9 4.6e-120 428.3
Blo12g01017 BCT 1 431 IQD Protein Family AT2G26180 60.9 1.8e-119 426.4
Blo18g00281 . 414 674 IQD Protein Family AT2G26180 56.3 6.8e-63 238.4
Blo03g01027 . 41 212 IQD Protein Family AT2G26180 61.7 1.1e-41 167.9
Blo16g00006 . 1 274 IQD Protein Family AT2G33990 52.5 5.6e-63 238.0
Blo07g00960 . 83 287 IQD Protein Family AT3G15050 54.1 3.6e-54 208.8
Blo02g00186 . 1 502 IQD Protein Family AT4G00820 50.4 1.5e-110 397.1
Blo05g00074 BCT,CCT,ECH 1 378 IQD Protein Family AT3G16490 50.9 1.0e-68 257.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00730 Blo_Chr13 FPKM 40.527416 41.380775 43.250526 43.695602 20.556686 14.986611 20.326511 52.246719 48.061218 60.740837