Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00761 ATGAGATCTTTGAGTAATTTGGGGCTTAGTTTGTGTGTGGTTTTTGCTTGTTTGTTCTTTGCTTTGGTTGCCGAGCTTTACTATTTATGGTGGAAGAAGAGTTCTTCCAAAAGAGAAACTGAAAAACGCCATGGGAGCGCAGAAACAGAGCTCTTCTTCATGTTTTGTAAGAGACGGTCATCTTCTATTTCTCGAAAAGCTCGAAGTCGCCGTGAACAGGAAGAAATGAAGGACAAAGAACCAGAGTCGCAGCTTAAAATTCTGCAATCTAAAAAGGACTTTTTGGTGAGACCCTTTAAAGAAGAAGAAGAAGAAGAAGACTTAGAAGCAGAGCTAATGAGGCTGCAAGGGCCACCGAGATTCCTCTACACCATCATAGAAGAAACAAAGGAAGATTTAGAGGCTGATGATTTGATTTTAACTGTGGAAACTCCATTTCTAACTCCTTTGAACTCCCCTTCTCTTTTCCCTCCCCTCACTCCCACTGAATCCCACAAACAAAATGGGTTCAACCCTCGTTGTGAATCTATGTCAGACGCAGAATTCAACAAGATGAGATCATCTCCACCCCCAACGTTTAAGTTCTTGCATGATGCAGACGAGAAGCTTAAGAGAAAATTAATGGAGGAAGCTAAGAGAGATGCTGTTGTGGAAGATGGGTCTTGTATTACTGTTATGGTGGACATGAAAAAGGATCAGAAGGAGTCCAATCGTCACCCTCGTTTTCCTCAGTTACATTCAAACAATTGGCAGCTTGAAACAGTTCAATTAAATTTTTCTCGCAGAATAGTTGGCTGGTTTAAACGTGTCGACTCTGTGAATGATTTTCTCCTTTTTTTTTTCCTGCTGCTGATGGCAGATGGGGAAGTTATCCAGCCTCTTGTTTTTGATAATGGAACAGTAATGTTTAAGGCTGGATTTGCTGGACATGACGCTCCCATAGTTGCGTTTCCCAGCATTGTAGGCCGTCCATGCCACACTGGTGTCATGGTTGGTATGGGACAGAAAGATGCTTATGTTGGGGATGAGGCTCAATCAAAGCGTGATATTTTAACACTGACGTATCCAATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAACTTCGTGTTGCCCCAGAGGAGCATCCTGTTCTCCTTACAGAGGCTCCTCTTAACCCAAAAGCCAACCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAACACTCCTGCTATGTATGTAGCCATTCAAGCTGTTCTATCTCTAGTTGCAAATGGTCGTACAACGGGTAAGCAGGTTATGGGTAAATGGATTAGCTGCTTTGTGCCAAAGATACTTGCGTGTTCTGTGCGACAACCCTGGTTTATGGGCATTTTCTTTTTACATGCTATTCTTCGTCTTGATTTGGCCGGTCGGGGTGTCACTGATCACTTAATGAAAATTCTGACGGAGCGTGGATACTCCTTTACCACAACAGCTGAGCGGGAAATTGTGAGGCACATGAAGCATTCGTTGGCATACATTGCTCTTGACTACGAACAGGAGATGGAAATTTCCAGGACCAGCTCTTCTGTTGAAGAGAGCTACGAGTTGCTTGATGGGCAGGTTATTACCATTGGTGCTGAGCGCTTCCGCTGCCTGGAGGTTCTTTTCCAACCATCAATGATCGGAATGGAAGCAGCAGGCATTCACGAGACAATATATAACTCTATCATGAAGTGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTCTCTGGTGGTTCAACTATGTTTCTAGGAATTGCTAATAGAATGAGCAAGGAAATTTCAGCACTTGCTCCGAGCAGCATGAAGGTAGAGGTGGTGGCCCCACTAGAACGAATGTACAGTGTCTGGATTGGAGGCTCCGTTTTGGCATCACTAAGCACCTTCGAACAGGTCGTGCTCAATACTACTTAG 1968 43.6 MRSLSNLGLSLCVVFACLFFALVAELYYLWWKKSSSKRETEKRHGSAETELFFMFCKRRSSSISRKARSRREQEEMKDKEPESQLKILQSKKDFLVRPFKEEEEEEDLEAELMRLQGPPRFLYTIIEETKEDLEADDLILTVETPFLTPLNSPSLFPPLTPTESHKQNGFNPRCESMSDAEFNKMRSSPPPTFKFLHDADEKLKRKLMEEAKRDAVVEDGSCITVMVDMKKDQKESNRHPRFPQLHSNNWQLETVQLNFSRRIVGWFKRVDSVNDFLLFFFLLLMADGEVIQPLVFDNGTVMFKAGFAGHDAPIVAFPSIVGRPCHTGVMVGMGQKDAYVGDEAQSKRDILTLTYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLVANGRTTGKQVMGKWISCFVPKILACSVRQPWFMGIFFLHAILRLDLAGRGVTDHLMKILTERGYSFTTTAEREIVRHMKHSLAYIALDYEQEMEISRTSSSVEESYELLDGQVITIGAERFRCLEVLFQPSMIGMEAAGIHETIYNSIMKCDVDIRKDLYGNIVLSGGSTMFLGIANRMSKEISALAPSSMKVEVVAPLERMYSVWIGGSVLASLSTFEQVVLNTT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 30365111 30368834 + BLOR19813 Blo13g00761 69156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00761 655 ProSitePatterns Actins and actin-related proteins signature. 390 402 IPR020902 -
Blo13g00761 655 SUPERFAMILY Actin-like ATPase domain 463 651 IPR043129 -
Blo13g00761 655 ProSitePatterns Actins signature 1. 339 349 IPR004001 -
Blo13g00761 655 Gene3D - 294 652 - -
Blo13g00761 655 MobiDBLite consensus disorder prediction 66 83 - -
Blo13g00761 655 Pfam Actin 291 651 IPR004000 -
Blo13g00761 655 CDD NBD_sugar-kinase_HSP70_actin 294 438 - -
Blo13g00761 655 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Blo13g00761 655 PRINTS Actin signature 401 414 IPR004000 -
Blo13g00761 655 PRINTS Actin signature 335 346 IPR004000 -
Blo13g00761 655 PRINTS Actin signature 312 321 IPR004000 -
Blo13g00761 655 PRINTS Actin signature 426 445 IPR004000 -
Blo13g00761 655 PRINTS Actin signature 370 388 IPR004000 -
Blo13g00761 655 PRINTS Actin signature 531 547 IPR004000 -
Blo13g00761 655 MobiDBLite consensus disorder prediction 64 83 - -
Blo13g00761 655 SUPERFAMILY Actin-like ATPase domain 291 432 IPR043129 -
Blo13g00761 655 Gene3D - 424 633 - -
Blo13g00761 655 PANTHER - 285 649 - -
Blo13g00761 655 SMART actin_3 291 655 IPR004000 -
Blo13g00761 655 Gene3D Actin; Chain A, domain 4 475 566 - -
Blo13g00761 655 PANTHER ACTIN 285 649 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00761 K10355 ACTF; actin, other eukaryote - mnt:21394037 582.022
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00888 Blo13g00761 CCT
Blo04g00104 Blo13g00761 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00761 Blo-Chr13:30365111 Blo04g00108 Blo-Chr4:922039 0 dispersed
Blo13g00888 Blo-Chr13:31448761 Blo13g00761 Blo-Chr13:30365111 4.32E-60 dispersed
Blo13g01081 Blo-Chr13:32948466 Blo13g00761 Blo-Chr13:30365111 3.59E-41 dispersed
Blo14g00122 Blo-Chr14:887251 Blo13g00761 Blo-Chr13:30365111 8.32E-46 dispersed
Blo13g00761 Blo-Chr13:30365111 Blo13g00886 Blo-Chr13:31432644 0 wgd
Blo13g00761 Blo-Chr13:30365111 Blo14g00119 Blo-Chr14:859346 0 wgd
Blo13g00761 Blo-Chr13:30365111 Blo03g01239 Blo-Chr3:38621398 1.38E-25 wgd
Blo13g00761 Blo-Chr13:30365111 Blo04g00277 Blo-Chr4:2106707 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g284 Blo04g00104 Blo13g00888 . Bda15g00222 Bpe04g01705 . Bma03g00292 Bma08g01121 . . . . . . . Cpe13g00848 . . . . . . . . . . . . . . . Cone1ag1286 Cone5ag0272 Cone11ag1126 Cone18ag0452 . . . . Blo13g00761 . . Bda15g00360 Bpe04g01705 . . Bma08g00995 . Cmo04g02757 Cmo15g00411 Cma04g02635 . Car04g02537 Car15g00374 . Cpe01g02289 . . . . . . . . . . . . . . . Csa05g01829 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.5e-215 743.8
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.8e-214 740.7
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.0e-214 740.3
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 8.5e-214 739.6
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 8.5e-214 739.6
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.9e-213 738.4
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.9e-213 738.4
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT2G37620 93.8 1.0e-203 706.1
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT2G37620 95.5 2.0e-199 691.8
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT2G37620 79.8 2.9e-161 565.1
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT2G37620 65.5 2.9e-129 458.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT5G59370 96.0 2.5e-213 738.0
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 3.2e-213 737.6
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.1
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.1e-212 734.9
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.3e-211 731.5
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT5G59370 95.0 5.2e-211 730.3
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.0
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.0
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT5G59370 93.8 1.5e-202 702.2
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT5G59370 95.5 7.7e-199 689.9
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT5G59370 80.9 4.0e-163 571.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT5G59370 65.3 1.2e-127 453.4
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G46520 96.3 1.1e-213 739.2
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.5e-213 738.8
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 737.3
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 9.4e-213 736.1
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 1.0e-211 732.6
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G46520 95.2 2.3e-211 731.5
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.1e-210 729.2
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.1e-210 729.2
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G46520 94.1 6.8e-203 703.4
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G46520 95.8 3.5e-199 691.0
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G46520 81.2 1.8e-163 572.4
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G46520 65.5 5.5e-128 454.5
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G12110 97.1 1.5e-215 745.3
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.5e-215 745.3
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 2.0e-215 745.0
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 741.9
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 1.5e-213 738.8
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 3.2e-213 737.6
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 7.2e-213 736.5
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 7.2e-213 736.5
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G12110 93.8 8.0e-204 706.4
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G12110 96.6 4.8e-201 697.2
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G12110 81.2 1.1e-163 573.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G12110 66.6 1.2e-130 463.4
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 6.3e-209 723.4
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 6.3e-209 723.4
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 8.2e-209 723.0
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT3G18780 91.8 5.3e-208 720.3
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT3G18780 91.5 1.6e-207 718.8
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT3G18780 90.3 2.2e-198 688.3
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT3G18780 92.2 5.2e-195 677.2
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT3G18780 77.4 7.8e-159 557.0
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT3G18780 62.1 1.3e-124 443.4
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.2e-209 724.9
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.2e-209 724.9
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.8e-209 724.5
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 6.3e-209 723.4
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.2e-209 723.0
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.8e-208 721.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT1G49240 91.8 5.3e-208 720.3
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT1G49240 90.3 2.2e-198 688.3
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT1G49240 92.4 1.8e-195 678.7
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT1G49240 77.7 2.7e-159 558.5
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT1G49240 62.3 4.3e-125 444.9
Blo06g00212 . 1 377 Cytoskeleton Gene Families AT5G09810 98.9 1.3e-217 752.3
Blo05g00554 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.8e-217 751.1
Blo04g00958 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 6.3e-217 750.0
Blo16g00535 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 6.3e-217 750.0
Blo14g00119 BCT 1 377 Cytoskeleton Gene Families AT5G09810 96.6 3.8e-214 740.7
Blo09g00434 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 8.5e-214 739.6
Blo04g00108 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.5e-213 738.8
Blo04g00277 . 397 773 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Blo13g01078 BCT 347 718 Cytoskeleton Gene Families AT5G09810 94.1 1.4e-203 705.7
Blo13g00886 . 290 646 Cytoskeleton Gene Families AT5G09810 96.1 5.4e-200 693.7
Blo13g00761 CCT 285 650 Cytoskeleton Gene Families AT5G09810 80.4 1.3e-161 566.2
Blo04g00110 . 281 550 Cytoskeleton Gene Families AT5G09810 65.8 1.7e-129 459.5
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 2.3e-57 218.4
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT2G19760 73.8 8.8e-49 189.9
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 75.6 3.7e-55 211.1
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT4G29350 74.6 6.7e-49 190.3
Blo16g01002 CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.9e-37 151.4
Blo16g01002 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 73.9 1.2e-56 216.1
Blo14g00527 CCT,ECH 1 126 Cytoskeleton Gene Families AT4G29340 77.0 5.4e-54 207.2
Blo08g00324 . 58 146 Cytoskeleton Gene Families AT4G29340 80.9 6.4e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033977 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00761 Blo_Chr13 FPKM 1.615836 1.173581 2.96572 2.256914 5.408586 3.736692 3.128181 2.241805 2.81128 2.518384